Query: NC_004129:3452885 Pseudomonas fluorescens Pf-5, complete genome
Start: 3452885, End: 3494840, Length: 41956
Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015138:2110149 | 2110149 | 2134842 | 24694 | Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008752:3684739 | 3684739 | 3718249 | 33511 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008752:2334511* | 2334511 | 2360126 | 25616 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_008390:1293823* | 1293823 | 1318870 | 25048 | Burkholderia cepacia AMMD chromosome 1, complete sequence | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_007510:1959883 | 1959883 | 2018034 | 58152 | Burkholderia sp. 383 chromosome 1, complete sequence | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_014355:1865003 | 1865003 | 1943668 | 78666 | Candidatus Nitrospira defluvii, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010002:3785313 | 3785313 | 3808099 | 22787 | Delftia acidovorans SPH-1, complete genome | 1e-34 | 157 | BLASTN svg | BLASTP svg |
NC_010002:4256651 | 4256651 | 4286316 | 29666 | Delftia acidovorans SPH-1, complete genome | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_015563:3786192* | 3786192 | 3820407 | 34216 | Delftia sp. Cs1-4 chromosome, complete genome | 3e-32 | 149 | BLASTN svg | BLASTP svg |
NC_015563:3309097 | 3309097 | 3342763 | 33667 | Delftia sp. Cs1-4 chromosome, complete genome | 8e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012912:1670784 | 1670784 | 1691599 | 20816 | Dickeya zeae Ech1591, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_008595:312861 | 312861 | 338369 | 25509 | Mycobacterium avium 104, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_002944:292974 | 292974 | 314208 | 21235 | Mycobacterium avium subsp. paratuberculosis K-10, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015379:3570658 | 3570658 | 3594496 | 23839 | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, | 0 | 1965 | BLASTN svg | BLASTP svg |
NC_008027:2331617 | 2331617 | 2357625 | 26009 | Pseudomonas entomophila L48, complete genome | 0 | 2244 | BLASTN svg | BLASTP svg |
NC_002947:3404000 | 3404000 | 3428085 | 24086 | Pseudomonas putida KT2440, complete genome | 9e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_015733:2194676 | 2194676 | 2216285 | 21610 | Pseudomonas putida S16 chromosome, complete genome | 1e-22 | 117 | BLASTN svg | BLASTP svg |
NC_010501:3013103 | 3013103 | 3036099 | 22997 | Pseudomonas putida W619, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_004578:3193490 | 3193490 | 3235118 | 41629 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_012791:4079062 | 4079062 | 4102530 | 23469 | Variovorax paradoxus S110 chromosome 1, complete genome | 8e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012792:385670 | 385670 | 409914 | 24245 | Variovorax paradoxus S110 chromosome 2, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |