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Query: NC_004129:2201780 Pseudomonas fluorescens Pf-5, complete genome

Start: 2201780, End: 2225354, Length: 23575

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020209:945000*94500096809923100Pseudomonas poae RE*1-1-14, complete genome01485BLASTN svgBLASTP svg
NC_010501:18688881868888190527536388Pseudomonas putida W619, complete genome0932BLASTN svgBLASTP svg
NC_008027:3953951*3953951397851024560Pseudomonas entomophila L48, complete genome0918BLASTN svgBLASTP svg
NC_007492:43108284310828433716726340Pseudomonas fluorescens PfO-1, complete genome2e-139504BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome5e-134486BLASTN svgBLASTP svg
NC_015733:1943385*1943385196159918215Pseudomonas putida S16 chromosome, complete genome1e-125458BLASTN svgBLASTP svg
NC_012660:1737423*1737423176616428742Pseudomonas fluorescens SBW25 chromosome, complete genome7e-84319BLASTN svgBLASTP svg
NC_002947:34040003404000342808524086Pseudomonas putida KT2440, complete genome7e-75289BLASTN svgBLASTP svg
NC_007005:2191500*2191500223078139282Pseudomonas syringae pv. syringae B728a, complete genome5e-48200BLASTN svgBLASTP svg
NC_005773:21771842177184220009922916Pseudomonas syringae pv. phaseolicola 1448A, complete genome6e-35157BLASTN svgBLASTP svg
NC_007645:2408125*2408125246220454080Hahella chejuensis KCTC 2396, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013851:26108472610847263605825212Allochromatium vinosum DSM 180 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007963:1370903*1370903139119320291Chromohalobacter salexigens DSM 3043, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010508:1705500*1705500172769222193Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_008542:1727000*1727000174809921100Burkholderia cenocepacia HI2424 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_008060:1182378*1182378120591323536Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_008752:27249772724977274618021204Acidovorax avenae subsp. citrulli AAC00-1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014837:31265433126543315305826516Pantoea sp. At-9b chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008752:10259801025980106353637557Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008686:13838911383891143076746877Paracoccus denitrificans PD1222 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg