Pre_GI: BLASTP Hits

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Query: NC_004129:5846415:5865022 Pseudomonas fluorescens Pf-5, complete genome

Start: 5865022, End: 5866215, Length: 1194

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011979:2352961:2367066236706623682441179Geobacter sp. FRC-32, complete genomeglycosyl transferase group 13e-110398
NC_013223:448343:4713364713364725141179Desulfohalobium retbaense DSM 5692, complete genomeglycosyl transferase group 12e-86319
NC_008782:3167440:3191845319184531930141170Acidovorax sp. JS42, complete genomeglycosyl transferase, group 13e-83309
NC_014958:2614399:2629388262938826305871200Deinococcus maricopensis DSM 21211 chromosome, complete genomegroup 1 glycosyl transferase2e-57223
NC_009615:2590207:2595014259501425961441131Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyl transferase family protein4e-57222
NC_014958:3131191:3142114314211431433521239Deinococcus maricopensis DSM 21211 chromosome, complete genomegroup 1 glycosyl transferase9e-57221
NC_014151:813755:8269148269148280921179Cellulomonas flavigena DSM 20109 chromosome, complete genomeglycosyl transferase group 12e-54213
NC_000911:352263:3811773811773823371161Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-1480.9
NC_017039:352263:3811773811773823371161Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein2e-1480.9
NC_017052:352251:3811653811653823251161Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein2e-1480.9
NC_017277:352263:3811773811773823371161Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-1480.9
NC_007489:42500:5010250102512381137Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequenceGlycosyl transferase, group 13e-1480.1
NC_013960:1319349:1325682132568213269261245Nitrosococcus halophilus Nc4 chromosome, complete genomeglycosyl transferase group 17e-1375.5
NC_015164:3210885:3230656323065632317861131Bacteroides salanitronis DSM 18170 chromosome, complete genomeglycosyl transferase group 12e-1274.3
NC_013223:2279869:2282805228280522852672463Desulfohalobium retbaense DSM 5692, complete genomeglycosyl transferase group 14e-1272.8
NC_019940:1059000:1084720108472010858621143Thioflavicoccus mobilis 8321 chromosome, complete genomeglycosyltransferase5e-1272.4
NC_014032:269844:3156233156233167951173Salinibacter ruber M8 chromosome, complete genomegroup 1 glycosyl transferase9e-1168.6
NC_009483:1936486:1959045195904519602471203Geobacter uraniireducens Rf4 chromosome, complete genomegroup 1 glycosyl transferase9e-1065.1
NC_013222:3060482:3070917307091730720591143Robiginitalea biformata HTCC2501, complete genomehypothetical protein9e-1065.1
NC_013173:2884887:2905945290594529070991155Desulfomicrobium baculatum DSM 4028, complete genomeglycosyl transferase group 13e-0963.5
NC_008781:3365468:3380828338082833819851158Polaromonas naphthalenivorans CJ2, complete genomeglycosyl transferase, group 14e-0859.3
NC_000917:532500:5549195549195559951077Archaeoglobus fulgidus DSM 4304, complete genomeLPS biosynthesis protein, putative6e-0858.9
NC_013741:424278:4382474382474393201074Archaeoglobus profundus DSM 5631, complete genomeglycosyl transferase group 11e-0758.2
NC_011901:2202690:2221297222129722225441248Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeglycosyltransferase1e-0757.8
NC_009925:330470:3455793455793467841206Acaryochloris marina MBIC11017, complete genomeglycosyl transferase, group 12e-0757
NC_011978:1046279:1062736106273610641481413Thermotoga neapolitana DSM 4359, complete genomeLipopolysaccharide biosynthesis protein-related protein5e-0755.8
NC_009615:3904962:3915244391524439163081065Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyl transferase family protein5e-0755.8
NC_015174:5157355:5176378517637851775891212Planctomyces brasiliensis DSM 5305 chromosome, complete genomeglycosyl transferase group 11e-0654.7