Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5483331 Pseudomonas fluorescens Pf-5, complete genome

Start: 5483331, End: 5484524, Length: 1194

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015977:3215770:3256002325600232575611560Roseburia hominis A2-183 chromosome, complete genomecardiolipin synthase8e-1685.1
NC_003366:461602:4662774662774678121536Clostridium perfringens str. 13, complete genomecardiolipin synthase7e-1582
NC_017030:3668146:3683855368385536854111557Corallococcus coralloides DSM 2259 chromosome, complete genomecardiolipin synthase2e-28126
NC_015913:178451:1964541964541979201467Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomecardiolipin synthase4e-2099.4
NC_015977:2966971:2978392297839229799511560Roseburia hominis A2-183 chromosome, complete genomecardiolipin synthase8e-1685.1
NC_010804:996837:1017917101791710193471431Burkholderia multivorans ATCC 17616 chromosome 1, completecardiolipin synthase5e-24112
NC_016630:864601:8937008937008951811482Filifactor alocis ATCC 35896 chromosome, complete genomecardiolipin synthase1e-1584.7
NC_007606:1209132:1211563121156312130231461Shigella dysenteriae Sd197, complete genomecardiolipin synthase2e-1584
NC_002488:1157684:1157684115768411590871404Xylella fastidiosa 9a5c, complete genomecardiolipin synthase4e-1273.2
NC_017030:158947:1603591603591615461188Corallococcus coralloides DSM 2259 chromosome, complete genomecardiolipin synthase1e-1894.7
NC_007712:2287053:2287053228705322885131461Sodalis glossinidius str. 'morsitans', complete genomecardiolipin synthase1e-1584.7
NC_017265:1765399:1779847177984717813071461Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,cardiolipin synthase 18e-1995.1
NC_013364:1596278:1600564160056416020241461Escherichia coli O111:H- str. 11128, complete genomecardiolipin synthase 11e-1584.7
NC_017047:3907854:3934403393440339356501248Rahnella aquatilis HX2 chromosome, complete genomecardiolipin synthase 23e-103375
NC_021150:2451500:2478928247892824800191092Azotobacter vinelandii CA6, complete genomecardiolipin synthase 26e-105381
NC_015723:1347946:1358735135873513600301296Cupriavidus necator N-1 chromosome 2, complete sequencecardiolipin synthase Cls2e-31137
NC_007384:2007467:2027644202764420291041461Shigella sonnei Ss046, complete genomecardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity1e-1584.7
NC_010571:637398:6747776747776763211545Opitutus terrae PB90-1, complete genomecardiolipin synthetase7e-27121
NC_017168:3290380:3296223329622332976831461Yersinia pestis A1122 chromosome, complete genomecardiolipin synthetase8e-1995.1
NC_009381:1064227:1070699107069910721591461Yersinia pestis Pestoides F chromosome, complete genomecardiolipin synthetase8e-1995.1
NC_004088:2227278:2240946224094622424271482Yersinia pestis KIM, complete genomecardiolipin synthetase9e-1995.1
NC_009801:1392696:1396047139604713975071461Escherichia coli E24377A, complete genomecardiolipin synthetase1e-1584.7
NC_014551:2057971:2064821206482120663141494Bacillus amyloliquefaciens DSM 7, complete genomecardiolipin synthetase1e-1481.3
NC_009708:2245586:2252731225273122541911461Yersinia pseudotuberculosis IP 31758 chromosome, complete genomecardiolipin synthetase8e-1995.1
NC_008149:1842500:1873334187333418747941461Yersinia pestis Nepal516, complete genomecardiolipin synthetase8e-1995.1
NC_011283:2185462:2187776218777621892361461Klebsiella pneumoniae 342 chromosome, complete genomecardiolipin synthetase2e-1893.6
NC_020260:1535394:1556443155644315579031461Cronobacter sakazakii Sp291, complete genomecardiolipin synthetase6e-1892
NC_008261:421000:4230444230444245791536Clostridium perfringens ATCC 13124, complete genomecardiolipin synthetase6e-1582.4
NC_014551:3864127:3881529388152938830221494Bacillus amyloliquefaciens DSM 7, complete genomecardiolipin synthetase1e-1481.3
NC_014643:1251847:1278592127859212800701479Rothia dentocariosa ATCC 17931 chromosome, complete genomecardiolipin synthetase9e-1065.1
NC_003272:5040500:5059332505933250607741443Nostoc sp. PCC 7120, complete genomecardiolipin synthetase2e-28127
NC_015733:5909821:5909821590982159112601440Pseudomonas putida S16 chromosome, complete genomecardiolipin synthetase3e-26120
NC_015978:1266196:1285223128522312866321410Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completeCardiolipin synthetase4e-22105
NC_014029:2138000:2147333214733321487931461Yersinia pestis Z176003 chromosome, complete genomecardiolipin synthetase8e-1995.1
NC_010159:2252380:2253916225391622553761461Yersinia pestis Angola, complete genomecardiolipin synthetase8e-1995.1
NC_016513:1529691:1532716153271615341731458Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completecardiolipin synthetase9e-1994.7
NC_016012:135500:1535261535261549921467Candidatus Arthromitus sp. SFB-rat-Yit, complete genomecardiolipin synthetase2e-1893.6
NC_017190:2002718:2009583200958320110761494Bacillus amyloliquefaciens LL3 chromosome, complete genomecardiolipin synthetase1e-1481.3
NC_012779:1629731:1634011163401116354711461Edwardsiella ictaluri 93-146, complete genomecardiolipin synthetase2e-1377
NC_007759:512477:5147015147015161791479Syntrophus aciditrophicus SB, complete genomecardiolipin synthetase8e-27121
NC_010322:6037566:6042477604247760439161440Pseudomonas putida GB-1 chromosome, complete genomecardiolipin synthetase5e-26119
NC_002570:3911153:3925822392582239270181197Bacillus halodurans C-125, complete genomecardiolipin synthetase3e-22106
NC_017160:2054289:2074925207492520763851461Yersinia pestis D182038 chromosome, complete genomecardiolipin synthetase8e-1995.1
NC_008150:1705152:1736673173667317381331461Yersinia pestis Antiqua, complete genomecardiolipin synthetase8e-1995.1
NC_014121:1653385:1671249167124916727091461Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completecardiolipin synthetase3e-1893.2
NC_008262:101731:1053771053771067891413Clostridium perfringens SM101, complete genomecardiolipin synthetase1e-1791.3
NC_017190:3879148:3896550389655038980431494Bacillus amyloliquefaciens LL3 chromosome, complete genomecardiolipin synthetase1e-1481.3
NC_021171:4674086:4688431468843146896391209Bacillus sp. 1NLA3E, complete genomecardiolipin synthetase domain-containing protein4e-1789.4
NC_009778:1477841:1497538149753814989981461Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1892
NC_007645:2181739:2183363218336321845321170Hahella chejuensis KCTC 2396, complete genomePhosphatidylserine/phosphatidylglycerophosphate/ c ardiolipin synthases and related enzyme8e-21101
NC_016616:1534983:1556447155644715578771431Dechlorosoma suillum PS chromosome, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase4e-24112
NC_020063:2011019:2012254201225420137141461Enterobacteriaceae bacterium strain FGI 57, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase1e-1894.7
NC_016627:2524307:2544478254447825460161539Clostridium clariflavum DSM 19732 chromosome, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase2e-1790.5
NC_020304:1097478:1099175109917511003381164Desulfocapsa sulfexigens DSM 10523, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase5e-47188
NC_019903:1058657:1058657105865710601861530Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase7e-1685.5
NC_003888:7866148:7870734787073478719211188Streptomyces coelicolor A3(2), complete genomephospholipase1e-25117
NC_016027:1851737:1866178186617818676081431Gluconacetobacter xylinus NBRC 3288, complete genomephospholipase D6e-1375.5
NC_014640:4951076:4964407496440749659001494Achromobacter xylosoxidans A8 chromosome, complete genomephospholipase D7e-24112
NC_011761:1499500:1504835150483515062111377Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephospholipase D5e-29129
NC_014640:6745873:6785825678582567870361212Achromobacter xylosoxidans A8 chromosome, complete genomephospholipase D1e-40167
NC_012997:4491871:4512967451296745142621296Teredinibacter turnerae T7901, complete genomephospholipase D catalytic domain protein1e-57224
NC_014751:225477:2272222272222287511530Mycoplasma leachii PG50 chromosome, complete genomephospholipase D domain protein2e-0654.3
NC_015222:1843093:1849790184979018511871398Nitrosomonas sp. AL212 chromosome, complete genomephospholipase D/Transphosphatidylase1e-31137
NC_015942:2060349:2064507206450720658441338Acidithiobacillus ferrivorans SS3 chromosome, complete genomephospholipase D/transphosphatidylase1e-29130
NC_011206:1379068:1390424139042413917611338Acidithiobacillus ferrooxidans ATCC 53993, complete genomephospholipase D/Transphosphatidylase5e-29129
NC_014622:5251000:5270699527069952722101512Paenibacillus polymyxa SC2 chromosome, complete genomephospholipase d/transphosphatidylase4e-26119
NC_013132:893849:9110869110869125641479Chitinophaga pinensis DSM 2588, complete genomephospholipase D/Transphosphatidylase1e-22107
NC_008048:389645:3983633983633997661404Sphingopyxis alaskensis RB2256, complete genomephospholipase D/Transphosphatidylase6e-2098.6
NC_013850:2103469:2121320212132021227801461Klebsiella variicola At-22 chromosome, complete genomephospholipase D/Transphosphatidylase2e-1893.6
NC_012560:2451500:2478916247891624800071092Azotobacter vinelandii DJ, complete genomePhospholipase D/Transphosphatidylase6e-105381
NC_013173:1259898:1294115129411512953921278Desulfomicrobium baculatum DSM 4028, complete genomephospholipase D/Transphosphatidylase8e-34144
NC_011146:3206000:3224504322450432256911188Geobacter bemidjiensis Bem, complete genomephospholipase D/Transphosphatidylase5e-30132
NC_007005:4810295:4828329482832948294861158Pseudomonas syringae pv. syringae B728a, complete genomePhospholipase D/Transphosphatidylase5e-29129
NC_011071:10842:1342113421148811461Stenotrophomonas maltophilia R551-3, complete genomephospholipase D/Transphosphatidylase3e-25116
NC_014011:962474:9812899812899828751587Aminobacterium colombiense DSM 12261 chromosome, complete genomephospholipase D/Transphosphatidylase4e-24112
NC_014393:3494863:3517034351703435184791446Clostridium cellulovorans 743B chromosome, complete genomephospholipase D/Transphosphatidylase1e-1894.7
NC_014833:3667748:3677827367782736794461620Ruminococcus albus 7 chromosome, complete genomephospholipase D/transphosphatidylase4e-1789.7
NC_014910:3727887:3758615375861537600181404Alicycliphilus denitrificans BC chromosome, complete genomephospholipase d/transphosphatidylase3e-1376.6
NC_015061:3840463:3866989386698938682361248Rahnella sp. Y9602 chromosome, complete genomephospholipase D/Transphosphatidylase2e-102373
NC_011883:2826000:2841201284120128426191419Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,phospholipase D/Transphosphatidylase2e-30134
NC_013166:1409790:1415554141555414166871134Kangiella koreensis DSM 16069, complete genomephospholipase D/Transphosphatidylase2e-24113
NC_014837:2354241:2372059237205923735191461Pantoea sp. At-9b chromosome, complete genomephospholipase D/transphosphatidylase4e-1996.3
NC_013517:2437574:2457769245776924592651497Sebaldella termitidis ATCC 33386, complete genomephospholipase D/Transphosphatidylase7e-1685.5
NC_009667:1371924:1399666139966614011261461Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencephospholipase D/transphosphatidylase1e-29130
NC_012918:1660477:1663006166300616641931188Geobacter sp. M21 chromosome, complete genomephospholipase D/transphosphatidylase6e-29128
NC_010084:2484000:2505426250542625068561431Burkholderia multivorans ATCC 17616 chromosome 1, completephospholipase D/transphosphatidylase5e-24112
NC_007969:2885249:2916935291693529183741440Psychrobacter cryohalolentis K5, complete genomephospholipase D/Transphosphatidylase1e-20101
NC_014507:1373325:1385037138503713865151479Methanoplanus petrolearius DSM 11571 chromosome, complete genomephospholipase D/transphosphatidylase2e-1997.4
NC_010465:2282874:2290018229001822914781461Yersinia pseudotuberculosis YPIII, complete genomephospholipase D/Transphosphatidylase9e-1994.7
NC_008686:1960034:1989186198918619906131428Paracoccus denitrificans PD1222 chromosome 1, complete sequencephospholipase D/Transphosphatidylase8e-1375.1
NC_015222:2089767:2089767208976720909391173Nitrosomonas sp. AL212 chromosome, complete genomephospholipase D/Transphosphatidylase4e-51202
NC_003366:64908:9206292062935041443Clostridium perfringens str. 13, complete genomeprobable cardiolipin synthase9e-1891.7
NC_005085:4335333:4369548436954843710651518Chromobacterium violaceum ATCC 12472, complete genomeprobable phosphatidylglycerol phosphate synthetase2e-20100
NC_017294:758992:7589927589927604401449Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeputative cardiolipin synthase1e-1481.3
NC_010943:9294:1315713157146171461Stenotrophomonas maltophilia K279a, complete genomeputative cardiolipin synthetase4e-26119
NC_004557:1:2487248739231437Clostridium tetani E88, complete genomeputative cardiolipin synthetase 26e-25115
NC_004557:2777291:2487248739231437Clostridium tetani E88, complete genomeputative cardiolipin synthetase 26e-25115
NC_002927:118982:1189821189821201931212Bordetella bronchiseptica RB50, complete genomeputative phospholipase2e-45183
NC_002928:123126:1231261231261243881263Bordetella parapertussis 12822, complete genomeputative phospholipase2e-45183
NC_010170:5087742:5111204511120451124151212Bordetella petrii, complete genomeputative phospholipase1e-42174
NC_014623:8763551:8783131878313187843961266Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesimialr to cardiolipin synthetase domain-containing protein7e-21102