Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5482558 Pseudomonas fluorescens Pf-5, complete genome

Start: 5482558, End: 5483334, Length: 777

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3907854:393364539336453934406762Rahnella aquatilis HX2 chromosome, complete genomeendonuclease/exonuclease/phosphatase6e-82303
NC_015061:3840463:386623138662313866992762Rahnella sp. Y9602 chromosome, complete genomeEndonuclease/exonuclease/phosphatase6e-82303
NC_015731:2039317:206866920686692069424756Nitrosomonas sp. Is79A3 chromosome, complete genomeEndonuclease/exonuclease/phosphatase3e-56218
NC_015222:2475792:248051324805132481265753Nitrosomonas sp. AL212 chromosome, complete genomeendonuclease/exonuclease/phosphatase8e-55213
NC_005085:2457295:2481330248133024825531224Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein2e-47189
NC_014640:6745873:678703367870336787899867Achromobacter xylosoxidans A8 chromosome, complete genomeendonuclease/exonuclease/phosphatase family protein 23e-41168
NC_010170:5087742:511241251124125113272861Bordetella petrii, complete genomehypothetical protein4e-39161
NC_002927:118982:118125118125118985861Bordetella bronchiseptica RB50, complete genomeputative endonuclease/exonuclease/phosphatase family protein3e-36152
NC_002928:123126:122320122320123180861Bordetella parapertussis 12822, complete genomeputative endonuclease/exonuclease/phosphatase family protein3e-36152
NC_009633:3055413:3071170307117030723091140Alkaliphilus metalliredigens QYMF chromosome, complete genomeendonuclease/exonuclease/phosphatase3e-1789
NC_009253:3017280:303459830345983035332735Desulfotomaculum reducens MI-1 chromosome, complete genomeendonuclease/exonuclease/phosphatase2e-1273.2
NC_006351:1886475:1888658188865818896741017Burkholderia pseudomallei K96243 chromosome 2, complete sequenceEndonuclease/Exonuclease/phosphatase family protein2e-1169.3
NC_009075:1906915:1909098190909819101141017Burkholderia pseudomallei 668 chromosome II, complete sequenceMetal-dependent hydrolase3e-1169.3
NC_009078:1841023:1843206184320618442221017Burkholderia pseudomallei 1106a chromosome II, complete sequenceendonuclease/exonuclease/phosphatase family protein1e-1067.4
NC_020181:1057476:106750110675011068403903Enterobacter aerogenes EA1509E, complete genomeprobable secreted protein3e-1065.9
NC_015663:4347187:435473543547354355637903Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-1065.9
NC_007435:566436:5664365664365698973462Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative Endonuclease/Exonuclease/phosphatase family protein1e-0963.5
NC_015711:3122000:312320531232053124071867Myxococcus fulvus HW-1 chromosome, complete genomeendonuclease/exonuclease/phosphatase family protein9e-0857.4
NC_012969:1442147:144441914444191445153735Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeEndonuclease/exonuclease/phosphatase1e-0653.5