Pre_GI: BLASTP Hits

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Query: NC_004129:5204500:5208423 Pseudomonas fluorescens Pf-5, complete genome

Start: 5208423, End: 5209082, Length: 660

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:2179592:218459721845972185313717Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1583.6
NC_011147:792489:811290811290811985696Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-1582
NC_006511:792543:811344811344812039696Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-1582
NC_012125:1632150:165329616532961654012717Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-1581.6
NC_006905:2235607:223920022392002239916717Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-1581.6
NC_004431:2444972:245500624550062455722717Escherichia coli CFT073, complete genomehypothetical protein6e-1580.9
NC_008253:2198583:220553922055392206255717Escherichia coli 536, complete genomehypothetical protein6e-1580.9
NC_003198:2179688:218468721846872185394708Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-1478.2
NC_004631:799810:818542818542819249708Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-1478.2
NC_016832:799764:818496818496819191696Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-1478.2