Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4617563 Pseudomonas fluorescens Pf-5, complete genome

Start: 4617563, End: 4618585, Length: 1023

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:47504:7962979629806361008Pseudomonas poae RE*1-1-14, complete genomeAraC family transcriptional regulator2e-91335
NC_012660:5793200:5815075581507558162291155Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family regulatory protein5e-91334
NC_015376:3320818:3331605333160533326571053Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator, AraC family protein2e-87322
NC_002516:2306776:2306776230677623078101035Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator1e-48194
NC_013510:4484000:4500552450055245016071056Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, AraC family3e-34145
NC_011770:4924127:4961086496108649621051020Pseudomonas aeruginosa LESB58, complete genometranscriptional regulator OruR5e-31135
NC_008463:4743296:4744858474485847458771020Pseudomonas aeruginosa UCBPP-PA14, complete genometranscriptional regulator OruR5e-31135
NC_002516:891000:9057269057269067451020Pseudomonas aeruginosa PAO1, complete genometranscriptional regulator OruR5e-31135
NC_010501:4989455:4998963499896350000001038Pseudomonas putida W619, complete genometranscriptional regulator, AraC family9e-30131
NC_008390:2448379:2449503244950324505401038Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, AraC family5e-28125
NC_010511:6067000:6076192607619260772861095Methylobacterium sp. 4-46 chromosome, complete genomeAraC family transcriptional regulator1e-27124
NC_015136:1101725:1127466112746611284941029Burkholderia sp. CCGE1001 chromosome 1, complete sequenceAraC family transcriptional regulator2e-27123
NC_009439:101174:121557121557122549993Pseudomonas mendocina ymp, complete genomeAraC family transcriptional regulator2e-25116
NC_014259:2948335:2949247294924729503171071Acinetobacter sp. DR1 chromosome, complete genomeAraC family transcriptional regulator3e-23109
NC_018691:4619245:4644618464461846456521035Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator, AraC family protein6e-22105
NC_020829:1840281:1842091184209118431221032Pseudomonas denitrificans ATCC 13867, complete genomeputative regulator7e-2098.2
NC_009075:92210:1022481022481032521005Burkholderia pseudomallei 668 chromosome II, complete sequenceputative transcriptional regulator9e-1891.3
NC_002516:2436304:244856824485682449545978Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator9e-1891.3
NC_006351:73000:8293882938839571020Burkholderia pseudomallei K96243 chromosome 2, complete sequenceregulatory protein1e-1790.9
NC_010557:316000:3182723182723192881017Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family2e-1790.1
NC_014310:1822751:1837637183763718386561020Ralstonia solanacearum PSI07 megaplasmid, complete sequenceAraC family transcriptional regulator1e-1687.8
NC_003296:673790:7245307245307255491020Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTION REGULATOR PROTEIN2e-1687
NC_008463:4342119:4364836436483643658371002Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable transcriptional regulator3e-1686.3
NC_010623:1961685:1995143199514319961891047Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family4e-1685.9
NC_011770:4542183:4564793456479345657941002Pseudomonas aeruginosa LESB58, complete genomeputative transcriptional regulator6e-1685.5
NC_010623:1961685:2021028202102820220441017Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family6e-1685.1
NC_021150:2348214:2371687237168723727331047Azotobacter vinelandii CA6, complete genomeTranscription activator in PHB biosynthesis, AraC family2e-1584
NC_012560:2348202:2371675237167523727211047Azotobacter vinelandii DJ, complete genomeTranscription activator in PHB biosynthesis, AraC family2e-1584
NC_018691:761560:7629207629207639421023Alcanivorax dieselolei B5 chromosome, complete genomePutative AraC family transcription regulator1e-1584
NC_010506:5155951:5172420517242051735231104Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, AraC family2e-1583.6
NC_014323:1:1504715047161081062Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein3e-1583.2
NC_007650:84140:9053790537915531017Burkholderia thailandensis E264 chromosome II, complete sequencehypothetical protein3e-1583.2
NC_020829:4429435:4442768444276844438141047Pseudomonas denitrificans ATCC 13867, complete genomeAraC family transcriptional regulator3e-1582.8
NC_007651:3656433:3668226366822636692451020Burkholderia thailandensis E264 chromosome I, complete sequencetranscriptional regulator, putative4e-1582.8
NC_012660:3179980:3185843318584331868591017Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family regulatory protein5e-1582.4
NC_007492:3180480:318583231858323186830999Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family5e-1582
NC_007511:3371319:3372433337243333734791047Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family2e-1480.1
NC_018697:505915:5090685090685100901023Cycloclasticus sp. P1 chromosome, complete genomeAraC-family transcriptional regulator2e-1480.1
NC_014323:992978:1005383100538310064171035Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein2e-1480.1
NC_020829:4429435:4441701444170144427711071Pseudomonas denitrificans ATCC 13867, complete genomeAraC family transcriptional regulator4e-1479.3
NC_011757:4293000:4333052433305243341491098Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family8e-1478.2
NC_018691:2254566:2259228225922822602921065Alcanivorax dieselolei B5 chromosome, complete genomePutative transcriptional regulator1e-1377.8
NC_008061:2193000:2207475220747522085691095Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family2e-1377
NC_020064:521500:5491445491445502021059Serratia marcescens FGI94, complete genomeDNA-binding domain-containing protein, AraC-type4e-1375.9
NC_011001:163813:1853691853691864151047Burkholderia cenocepacia J2315 chromosome 2, complete sequenceAraC family regulatory protein8e-1375.1
NC_013222:1659619:168204516820451683022978Robiginitalea biformata HTCC2501, complete genometranscriptional regulator, AraC family protein1e-1274.3
NC_010172:31264:5004950049511311083Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type2e-1273.2
NC_007492:3180480:3186837318683731878891053Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family3e-1273.2
NC_016887:1714664:172429617242961725198903Nocardia cyriacigeorgica GUH-2, complete genometranscriptional regulator5e-1272.4
NC_009075:92210:946159461595127513Burkholderia pseudomallei 668 chromosome II, complete sequencetranscriptional regulator, AraC family5e-1272
NC_007435:1914375:191647419164741917091618Burkholderia pseudomallei 1710b chromosome II, complete sequenceAraC family regulatory protein7e-1271.6
NC_006351:73000:752967529675802507Burkholderia pseudomallei K96243 chromosome 2, complete sequenceAraC family regulatory protein1e-1171.2
NC_011757:1288637:1298341129834112994411101Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family1e-1170.9
NC_009078:74954:773597735977871513Burkholderia pseudomallei 1106a chromosome II, complete sequenceAraC family regulatory protein1e-1170.9
NC_011979:589874:594253594253595227975Geobacter sp. FRC-32, complete genometranscriptional regulator, AraC family1e-1170.9
NC_010172:31264:3612336123372231101Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type1e-1170.5
NC_002678:5060670:5060670506067050617341065Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-1170.5
NC_013592:1602242:1616182161618216171921011Dickeya dadantii Ech586, complete genometranscriptional regulator, AraC family3e-1169.7
NC_013222:1659619:168700316870031687992990Robiginitalea biformata HTCC2501, complete genometranscriptional regulator, AraC family protein3e-1169.7
NC_014762:2428721:2451614245161424526541041Sulfuricurvum kujiense DSM 16994 chromosome, complete genometranscriptional regulator, arac family3e-1169.7
NC_009338:4869700:4887442488744248884821041Mycobacterium gilvum PYR-GCK chromosome, complete genomehelix-turn-helix domain-containing protein4e-1169.3
NC_004578:5916711:594281359428135943805993Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, AraC family4e-1169.3
NC_011894:2359128:2371528237152823726161089Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family3e-1169.3
NC_015690:1967244:2015425201542520164621038Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator6e-1168.6
NC_012880:1585255:1593922159392215949351014Dickeya dadantii Ech703, complete genometranscriptional regulator, AraC family7e-1168.6
NC_016830:3869572:3944718394471839457341017Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator8e-1168.2
NC_016609:3835656:384093838409383841936999Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator1e-1067.4
NC_008740:2905990:2905990290599029070031014Marinobacter aquaeolei VT8, complete genomehelix-turn-helix- domain containing protein, AraC type2e-1067.4
NC_011884:2422000:2433017243301724340331017Cyanothece sp. PCC 7425, complete genometranscriptional regulator, AraC family2e-1067
NC_008705:3430839:3436435343643534374391005Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type2e-1067
NC_009077:3376351:3381947338194733829511005Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type2e-1067
NC_008146:3401743:3408153340815334091571005Mycobacterium sp. MCS, complete genometranscriptional regulator, AraC family2e-1067
NC_016947:2380500:2392470239247023934741005Mycobacterium intracellulare MOTT-02 chromosome, complete genomeAraC family transcriptional regulator2e-1067
NC_011894:2125474:213090421309042131221318Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family5e-1065.5
NC_013037:6344532:6368914636891463699511038Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, AraC family7e-1065.1
NC_003911:1078949:110804211080421109040999Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family1e-0964.3
NC_011894:7702000:773128277312827731632351Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family1e-0964.3
NC_013192:1504310:1504310150431015053831074Leptotrichia buccalis DSM 1135, complete genometranscriptional regulator, AraC family2e-0963.2
NC_008702:3375027:3391123339112333922561134Azoarcus sp. BH72, complete genomeputative ornithine utilization regulator5e-0962.4
NC_015723:1448000:1459268145926814602901023Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator4e-0962.4
NC_012792:707864:7078647078647089371074Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, AraC family4e-0962.4
NC_010511:2079744:210000321000032100419417Methylobacterium sp. 4-46 chromosome, complete genome7e-0961.6
NC_008027:2648560:2664870266487026658741005Pseudomonas entomophila L48, complete genomeDNA-binding protein, AraC family9e-0961.6
NC_012759:461680:485664485664486413750Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; DNA-binding transcriptional activator1e-0861.2
NC_000913:558920:582904582904583653750Escherichia coli K12, complete genomeDLP12 prophage; DNA-binding transcriptional activator1e-0861.2
AC_000091:558920:582904582904583653750Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator1e-0861.2
NC_011751:680417:689047689047689796750Escherichia coli UMN026 chromosome, complete genomeDNA-binding transcriptional activator; DLP12 prophage1e-0861.2
NC_010473:623810:635496635496636245750Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; DNA-binding transcriptional activator1e-0861.2
NC_010473:498252:522236522236522985750Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; DNA-binding transcriptional activator1e-0861.2
NC_009832:1280938:1293321129332112943581038Serratia proteamaculans 568, complete genometranscriptional regulator, AraC family1e-0860.8
NC_014364:3633291:364876036487603649443684Spirochaeta smaragdinae DSM 11293 chromosome, complete genome2e-0860.5
NC_007974:2097334:2111901211190121129471047Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, AraC family2e-0860.5
NC_009656:5505413:5527239552723955283091071Pseudomonas aeruginosa PA7 chromosome, complete genomeAraC family transcriptional regulator5e-0858.9
NC_010623:1961685:1973975197397519750391065Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family6e-0858.5
NC_015677:3787419:379209937920993793067969Ramlibacter tataouinensis TTB310 chromosome, complete genomeAraC family transcriptional regulator6e-0858.5
NC_014618:2788533:279390727939072794872966Enterobacter cloacae SCF1 chromosome, complete genomeAraC family transcriptional regulator8e-0858.2
NC_010511:4415731:442598544259854426191207Methylobacterium sp. 4-46 chromosome, complete genome8e-0858.2
NC_010162:8873051:888440788844078885000594Sorangium cellulosum 'So ce 56', complete genomeAraC family transcriptional regulator8e-0858.2
NC_011894:2503639:251167325116732511990318Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family1e-0757.8
NC_010511:7553703:757677675767767577060285Methylobacterium sp. 4-46 chromosome, complete genome2e-0757
NC_011748:3983432:402899840289984029726729Escherichia coli 55989, complete genomeDNA-binding transcriptional activator2e-0756.6
AP010958:4313462:433110043311004331828729Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional activator GadW2e-0756.6
CU928160:3709081:372787537278753728603729Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator2e-0756.6
CU928145:3983432:402899840289984029726729Escherichia coli 55989 chromosome, complete genomeDNA-binding transcriptional activator2e-0756.6
NC_011741:3709081:372787537278753728603729Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator2e-0756.6
NC_013353:4313462:433110043311004331828729Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional activator GadW2e-0756.6
NC_013361:4566779:458465945846594585387729Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional activator GadW2e-0756.6
NC_013364:4306000:432337943233794324107729Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional activator GadW2e-0756.6
NC_017075:2689014:2690594269059426916161023Rubrivivax gelatinosus IL144, complete genomeAraC family transcriptional regulator2e-0756.6
NC_012967:3549880:359338135933813594109729Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional activator2e-0756.6
NC_012759:3529657:355040735504073551135729Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator2e-0756.6
NC_009800:3685651:370520137052013705929729Escherichia coli HS, complete genometranscriptional regulator GadW2e-0756.6
NC_000913:3624826:366191336619133662641729Escherichia coli K12, complete genomeDNA-binding transcriptional activator2e-0756.6
NC_004337:3590323:369849036984903699218729Shigella flexneri 2a str. 301, complete genomeputative ARAC-type regulatory protein2e-0756.6
NC_010501:3671517:3693177369317736942051029Pseudomonas putida W619, complete genometranscriptional regulator, AraC family3e-0756.2
NC_003911:4001094:4017291401729140183221032Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family5e-0755.8
NC_000911:15937:2799027990290301041Synechocystis sp. PCC 6803, complete genomeregulatory protein; PcrR4e-0755.8
NC_017039:15937:2799027990290301041Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeregulatory protein PcrR4e-0755.8
NC_017052:15937:2799027990290301041Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeregulatory protein PcrR4e-0755.8
NC_017277:15937:2799027990290301041Synechocystis sp. PCC 6803, complete genomeregulatory protein PcrR4e-0755.8
NC_010506:3585533:3602734360273436038131080Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, AraC family5e-0755.5
NC_008314:1825223:1825223182522318262451023Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, AraC-family6e-0755.5
NC_011894:2747491:2753607275360727547491143Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family8e-0755.1
NC_011894:585637:613011613011613421411Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family1e-0654.7
NC_014206:1694330:1703164170316417043721209Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator9e-0754.7
NC_015663:3742738:3760268376026837612751008Enterobacter aerogenes KCTC 2190 chromosome, complete genomeAraC family transcriptional regulator1e-0654.3
NC_013008:306953:312980312980313723744Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_011353:305820:312981312981313724744Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator1e-0653.9
NC_002695:301939:309100309100309843744Escherichia coli O157:H7 str. Sakai, complete genomeputative transcription regulator1e-0653.9
NC_002655:301940:309101309101309844744Escherichia coli O157:H7 EDL933, complete genomeputative AraC-type regulatory protein encoded in prophage CP-933H1e-0653.9
NC_020181:1653261:1656963165696316579701008Enterobacter aerogenes EA1509E, complete genomevirulence regulating protein2e-0653.5
NC_010172:573046:5788135788135798771065Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type2e-0653.5
NC_015563:5289875:5289875528987552908821008Delftia sp. Cs1-4 chromosome, complete genomeAraC family transcriptional regulator3e-0653.1
NC_008314:2744553:2764060276406027651871128Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator3e-0653.1
NC_009328:1903291:1909484190948419106861203Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein3e-0652.8
NC_015566:3417951:345056934505693451453885Serratia sp. AS12 chromosome, complete genomeAraC family transcriptional regulator4e-0652.8
NC_013446:3209000:3211048321104832120641017Comamonas testosteroni CNB-2, complete genometranscriptional regulator, AraC family4e-0652.8
NC_012912:4071859:408833840883384089192855Dickeya zeae Ech1591, complete genometranscriptional regulator, AraC family4e-0652.4
NC_007645:6407370:642240164224016423237837Hahella chejuensis KCTC 2396, complete genomeAraC-type DNA-binding domain-containing protein1e-0551.2