Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4615597 Pseudomonas fluorescens Pf-5, complete genome

Start: 4615597, End: 4616898, Length: 1302

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:3394000:3398891339889134001201230Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transporter, sodium-dicarboxylate symporte1e-145516
NC_002516:2222896:2234080223408022353091230Pseudomonas aeruginosa PAO1, complete genomeprobable transporter (membrane subunit)2e-145516
NC_011770:3626000:3630514363051436317431230Pseudomonas aeruginosa LESB58, complete genomeputative transporter (membrane subunit)3e-145514
NC_015224:3892972:3928038392803839292941257Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,serine/threonine transporter SstT8e-129460
NC_013716:5020204:5047808504780850490521245Citrobacter rodentium ICC168, complete genomeputative transport protein7e-126450
NC_017516:2183708:2208721220872122099501230Neisseria meningitidis H44/76 chromosome, complete genomesodium/serine symporter SstT1e-118426
NC_003112:2215184:2240197224019722414261230Neisseria meningitidis MC58, complete genomesodium/dicarboxylate symporter family protein1e-118426
NC_017513:2134308:2152987215298721542161230Neisseria meningitidis G2136 chromosome, complete genomesodium/serine symporter SstT3e-118425
NC_017514:2165166:2192008219200821932371230Neisseria meningitidis M01-240149 chromosome, complete genomesodium/serine symporter SstT3e-118425
NC_017518:2190607:2217449221744922186781230Neisseria meningitidis NZ-05/33 chromosome, complete genomeNa+/serine symporter SstT3e-118425
NC_010120:2098000:2119534211953421207631230Neisseria meningitidis 053442, complete genomesodium/dicarboxylate symporter family protein5e-118424
NC_017515:2194500:2218864221886422200931230Neisseria meningitidis M04-240196 chromosome, complete genomesodium/serine symporter SstT2e-117423
NC_017517:2228000:2256293225629322575221230Neisseria meningitidis M01-240355 chromosome, complete genomesodium/serine symporter SstT1e-117423
NC_008767:2126854:2149399214939921506281230Neisseria meningitidis FAM18, complete genomeputative symport protein1e-117423
NC_011035:1876555:1897600189760018988291230Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeserine/threonine transporter SstT1e-117423
NC_017501:2219803:2246549224654922477781230Neisseria meningitidis 8013, complete genomeputative transporter1e-117423
NC_017511:1783000:1801454180145418026831230Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeserine/threonine transporter SstT1e-117423
NC_017505:2192284:2211174221117422124031230Neisseria meningitidis alpha710 chromosome, complete genomeserine/threonine transporter SstT3e-117422
NC_010506:2146444:2172682217268221739111230Shewanella woodyi ATCC 51908, complete genomesodium:dicarboxylate symporter3e-115415
NC_015637:669593:6869666869666882191254Vibrio anguillarum 775 chromosome chromosome II, complete sequenceserine/threonine sodium symporter7e-115414
NC_010939:896500:9203859203859215991215Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical symporter6e-110397
NC_009328:293000:3583003583003595321233Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeserine/threonine transporter SstT1e-105383
NC_013520:571647:5755085755085767281221Veillonella parvula DSM 2008, complete genomesodium:dicarboxylate symporter3e-103375
NC_012778:364728:3695093695093707321224Eubacterium eligens ATCC 27750, complete genomedicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family5e-86318
NC_009092:2589000:2602359260235926036781320Shewanella loihica PV-4, complete genomesodium:dicarboxylate symporter1e-1584.7
NC_014532:110875:1292991292991305551257Halomonas elongata DSM 2581, complete genomesodium:dicarboxylate symporter1e-1378.2
NC_009142:5647737:5656761565676156579541194Saccharopolyspora erythraea NRRL 2338, complete genomeprobable Na(+)/glutamate:H(+) symporter1e-1171.2
NC_014538:1311500:1323226132322613244341209Thermoanaerobacter sp. X513 chromosome, complete genomesodium:dicarboxylate symporter7e-1168.9
NC_010320:1585974:1589948158994815911561209Thermoanaerobacter sp. X514 chromosome, complete genomesodium:dicarboxylate symporter7e-1168.9
NC_014964:1169925:1175670117567011768781209Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completesodium:dicarboxylate symporter6e-1168.9
NC_010321:1177238:1183479118347911846871209Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completesodium:dicarboxylate symporter6e-1168.9
NC_010718:2551000:2564309256430925656281320Natranaerobius thermophilus JW/NM-WN-LF, complete genomesodium:dicarboxylate symporter8e-1168.6
NC_009495:2085000:2092192209219220934631272Clostridium botulinum A str. ATCC 3502 chromosome, complete genomesodium:dicarboxylate symporter1e-1068.2
NC_009698:2012500:2021050202105020223451296Clostridium botulinum A str. Hall chromosome, complete genomesodium:dicarboxylate symporter family protein1e-1067.8
NC_009697:2012500:2020833202083320221281296Clostridium botulinum A str. ATCC 19397 chromosome, completesodium:dicarboxylate symporter family protein1e-1067.8
NC_010516:2093901:2100298210029821015931296Clostridium botulinum B1 str. Okra, complete genomesodium:dicarboxylate symporter family protein1e-1067.8
NC_012563:2230403:2238901223890122401961296Clostridium botulinum A2 str. Kyoto, complete genomesodium:dicarboxylate symporter family protein2e-1067.4
NC_005861:2120633:2140226214022621414551230Candidatus Protochlamydia amoebophila UWE25, complete genomeputative proton/sodium-glutamate symporter5e-1065.9
NC_020211:379000:3932893932893945631275Serratia marcescens WW4, complete genomeC4-dicarboxylate transporter DctA7e-1065.5
NC_017297:2143000:2150631215063121519021272Clostridium botulinum F str. 230613 chromosome, complete genomesodium:dicarboxylate symporter family protein8e-1065.5
NC_009699:2142177:2150532215053221518031272Clostridium botulinum F str. Langeland chromosome, complete genomesodium:dicarboxylate symporter family protein8e-1065.5
NC_009883:343067:3585333585333597381206Rickettsia bellii OSU 85-389, complete genomeNa+/H+-dicarboxylate symporters1e-0964.3
NC_007940:1178000:1182402118240211836071206Rickettsia bellii RML369-C, complete genomeNa+/H+-dicarboxylate symporters1e-0964.3
NC_014171:1356000:1356120135612013573551236Bacillus thuringiensis BMB171 chromosome, complete genomeproton/sodium-glutamate symport protein2e-0963.9
NC_004722:1352000:1352008135200813532431236Bacillus cereus ATCC 14579, complete genomeProton/sodium-glutamate symport protein2e-0963.9
NC_018604:233769:2466992466992479911293Brachyspira pilosicoli WesB complete genomeNa/H dicarboxylate symporters putative2e-0963.9
NC_011725:1383798:1383798138379813850331236Bacillus cereus B4264 chromosome, complete genomeproton/glutamate symporter family protein2e-0963.9
NC_015634:2492771:2492771249277124940721302Bacillus coagulans 2-6 chromosome, complete genomesodium:dicarboxylate symporter3e-0963.5
NC_014330:1541874:1555240155524015565321293Brachyspira pilosicoli 95/1000 chromosome, complete genomeNa/H dicarboxylate symporters putative3e-0963.5
NC_018607:2578433:2581504258150425827961293Brachyspira pilosicoli B2904 chromosome, complete genomeNa/H dicarboxylate symporters putative3e-0963.5
NC_010280:769639:7784697784697797071239Chlamydia trachomatis L2b/UCH-1/proctitis, complete genomeSodium:dicarboxylate symport protein4e-0963.2
NC_010287:769600:7784307784307796681239Chlamydia trachomatis 434/Bu, complete genomeSodium:dicarboxylate symport protein4e-0963.2
NC_015744:769907:7781397781397793771239Chlamydia trachomatis L2c chromosome, complete genomesodium:dicarboxylate symporter family protein4e-0963.2
NC_012658:2138791:2146922214692221482171296Clostridium botulinum Ba4 str. 657 chromosome, complete genomesodium:dicarboxylate symporter family protein4e-0963.2
NC_017439:451535:4603654603654616031239Chlamydia trachomatis E/150 chromosome, complete genomeSodium:dicarboxylate symport protein5e-0962.8
NC_017431:451551:4603814603814616191239Chlamydia trachomatis E/11023 chromosome, complete genomeSodium:dicarboxylate symport protein5e-0962.8
NC_016050:236000:2374852374852386841200Rickettsia japonica YH, complete genomeNa+/H+-dicarboxylate symporters1e-0861.6
NC_015866:233448:2365402365402377391200Rickettsia heilongjiangensis 054 chromosome, complete genomeNa+/H+-dicarboxylate symporter1e-0861.6
NC_012581:2885519:2905193290519329064281236Bacillus anthracis str. CDC 684 chromosome, complete genomeproton/glutamate symporter family protein3e-0860.5
NC_007530:1332768:1332768133276813340031236Bacillus anthracis str. 'Ames Ancestor', complete genomeproton/glutamate symporter family protein3e-0860.5
NC_014335:1329414:1329414132941413306491236Bacillus cereus biovar anthracis str. CI chromosome, completesodium:dicarboxylate symporter family protein3e-0860.5
NC_011969:1437514:1437514143751414387491236Bacillus cereus Q1 chromosome, complete genomeproton/glutamate symporter family protein3e-0860.5
NC_016913:917500:9335599335599347581200Rickettsia rickettsii str. Brazil chromosome, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_016911:232481:2343042343042355031200Rickettsia rickettsii str. Hauke chromosome, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_016909:230000:2342162342162354151200Rickettsia rickettsii str. Arizona chromosome, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_010263:232482:2343562343562355551200Rickettsia rickettsii str. Iowa, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_009882:232400:2342622342622354611200Rickettsia rickettsii str. 'Sheila Smith', complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_016914:231324:2344432344432356421200Rickettsia rickettsii str. Hino chromosome, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_016931:232981:2348012348012360001200Rickettsia massiliae str. AZT80 chromosome, complete genomeNa+/H+-dicarboxylate symporter3e-0860.1
NC_017028:316000:3175213175213187201200Candidatus Rickettsia amblyommii str. GAT-30V chromosome, completeproton/sodium-glutamate symport protein3e-0860.1
NC_003103:225956:2304832304832316821200Rickettsia conorii str. Malish 7, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_016930:228000:2322932322932334921200Rickettsia philipii str. 364D chromosome, complete genomeproton/sodium-glutamate symport protein3e-0860.1
NC_009900:231983:2371862371862383881203Rickettsia massiliae MTU5, complete genomeNa+/H+-dicarboxylate symporter3e-0860.1
NC_006274:1367377:1367377136737713686121236Bacillus cereus E33L, complete genomesodium:dicarboxylate symporter family protein3e-0860.1
NC_011658:1437813:1437813143781314390481236Bacillus cereus AH187 chromosome, complete genomeproton/glutamate symporter family protein4e-0859.7
NC_016771:1397292:1397292139729213985271236Bacillus cereus NC7401, complete genomeproton/glutamate symporter family protein4e-0859.7
NC_017042:310000:3151003151003162991200Rickettsia rhipicephali str. 3-7-female6-CWPP chromosome, completeNa+/H+-dicarboxylate symporter4e-0859.7
NC_000963:205546:2104752104752116741200Rickettsia prowazekii str. Madrid E, complete genomePROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN (gltP)5e-0859.3
NC_017048:547712:5526435526435538421200Rickettsia prowazekii str. GvV257 chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_017049:203748:2086772086772098761200Rickettsia prowazekii str. Chernikova chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_017050:205547:2104762104762116751200Rickettsia prowazekii str. Katsinyian chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_017051:203752:2086812086812098801200Rickettsia prowazekii str. Dachau chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_017056:205558:2104872104872116861200Rickettsia prowazekii str. BuV67-CWPP chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_017057:205771:2107022107022119011200Rickettsia prowazekii str. RpGvF24 chromosome, complete genomeproton/sodium-glutamate symport protein5e-0859.3
NC_012730:332500:3481473481473493461200Rickettsia peacockii str. Rustic, complete genomeNa+/H+-dicarboxylate symporter5e-0859.3
NC_002620:803696:8136738136738149021230Chlamydia muridarum Nigg, complete genomesodium:dicarboxylate symporter family protein7e-0858.9
NC_012660:4734363:4737660473766047389551296Pseudomonas fluorescens SBW25 chromosome, complete genomeputative proton glutamate symport protein1e-0758.5
NC_017058:1200500:1215910121591012171091200Rickettsia australis str. Cutlack chromosome, complete genomeNa+/H+-dicarboxylate symporter9e-0858.5
NC_016111:3659269:3668019366801936692841266Streptomyces cattleya NRRL 8057, complete genomeProton transport protein2e-0757.4
NC_015160:3301938:3316809331680933179721164Odoribacter splanchnicus DSM 20712 chromosome, complete genomesodium:dicarboxylate symporter2e-0757.4
NC_010617:1910388:1913439191343919149171479Kocuria rhizophila DC2201, complete genomeDAACS family transporter2e-0757.4
NC_012962:3463644:3491508349150834927611254Photorhabdus asymbiotica, complete genomec4-dicarboxylate transport protein2e-0757.4
NC_014218:534986:5529025529025541071206Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomesodium:dicarboxylate symporter2e-0757.4
NC_018697:1343756:1352154135215413535241371Cycloclasticus sp. P1 chromosome, complete genomePermease, Na+/H+-dicarboxylate symporter3e-0757
NC_011770:4542183:4563148456314845644581311Pseudomonas aeruginosa LESB58, complete genomeC4-dicarboxylate transport protein3e-0757
NC_008463:4342119:4363190436319043645001311Pseudomonas aeruginosa UCBPP-PA14, complete genomeC4-dicarboxylate transport protein3e-0757
NC_015683:2176156:2190845219084521921341290Corynebacterium ulcerans BR-AD22 chromosome, complete genomesodium/dicarboxylate symporter family protein3e-0756.6
NC_014933:3251000:3256164325616432573481185Bacteroides helcogenes P 36-108 chromosome, complete genomesodium:dicarboxylate symporter4e-0756.2
NC_009881:236500:2382252382252394241200Rickettsia akari str. Hartford, complete genomeproton/sodium-glutamate symport protein5e-0756.2
NC_013385:90331:1018161018161030391224Ammonifex degensii KC4, complete genomesodium:dicarboxylate symporter7e-0755.8
NC_014759:2438492:2461248246124824626151368Marivirga tractuosa DSM 4126 chromosome, complete genomesodium:dicarboxylate symporter6e-0755.8
NC_017387:1110412:1128657112865711299191263Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeaerobic C4-dicarboxylate transport protein6e-0755.8
NC_019940:203718:2074552074552088191365Thioflavicoccus mobilis 8321 chromosome, complete genomeNa+/H+ dicarboxylate symporter7e-0755.5
NC_010723:1967106:1984952198495219863311380Clostridium botulinum E3 str. Alaska E43, complete genomesodium:dicarboxylate symporter family protein1e-0655.1
NC_009879:200419:2164292164292176281200Rickettsia canadensis str. McKiel, complete genomeproton/sodium-glutamate symport protein2e-0654.3
NC_016929:197403:2174162174162186151200Rickettsia canadensis str. CA410 chromosome, complete genomeproton/sodium-glutamate symport protein2e-0654.3
NC_010520:3526883:3550024355002435512351212Clostridium botulinum A3 str. Loch Maree, complete genomesodium:dicarboxylate symporter family protein3e-0653.5
NC_002950:353549:3558483558483570261179Porphyromonas gingivalis W83, complete genomeserine/threonine transporter3e-0653.5
NC_004337:3590323:3652321365232136536071287Shigella flexneri 2a str. 301, complete genomeC4-dicarboxylate transport protein4e-0653.1
NC_008314:2744553:2775318277531827766251308Ralstonia eutropha H16 chromosome 2, complete sequenceC4-dicarboxylate transport protein4e-0653.1
NC_010729:1818500:1834937183493718361151179Porphyromonas gingivalis ATCC 33277, complete genomeserine/threonine transporter4e-0653.1
NC_017353:646195:6649596649596662361278Staphylococcus lugdunensis N920143, complete genomeputative proton/sodium-glutamate symport protein4e-0653.1
NC_012660:3320330:3341828334182833431591332Pseudomonas fluorescens SBW25 chromosome, complete genomeputative aerobic C4-dicarboxylate transport protein3e-0653.1
NC_014483:1376500:1394014139401413954111398Paenibacillus polymyxa E681 chromosome, complete genomeHypothetical symporter6e-0652.4
NC_016641:3173250:3194589319458931959861398Paenibacillus terrae HPL-003 chromosome, complete genomesodium:dicarboxylate symporter9e-0652