Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4599284 Pseudomonas fluorescens Pf-5, complete genome

Start: 4599284, End: 4601155, Length: 1872

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:2589951:2633536263353626354071872Pseudomonas putida KT2440, complete genomepeptidyl-prolyl cis-trans isomerase D, putative0960
NC_012560:2348202:2365188236518823670621875Azotobacter vinelandii DJ, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase0800
NC_021150:2348214:2365200236520023670741875Azotobacter vinelandii CA6, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase0800
NC_007645:2204066:2215875221587522177611887Hahella chejuensis KCTC 2396, complete genomeParvulin-like peptidyl-prolyl isomerase7e-117421
NC_014315:1463383:1463383146338314653051923Nitrosococcus watsoni C-113 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-89329
NC_013960:804567:8045678045678064801914Nitrosococcus halophilus Nc4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase9e-89328
NC_010995:2312901:2317050231705023189151866Cellvibrio japonicus Ueda107, complete genomeputative peptidyl-prolyl cis-trans isomerase D1e-87324
NC_007484:1975322:1995112199511219970341923Nitrosococcus oceani ATCC 19707, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase8e-84311
NC_008570:2216736:2219758221975822216681911Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomepeptidylprolyl cis-trans isomerase D4e-66253
NC_008344:669498:6701106701106720021893Nitrosomonas eutropha C91, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-61236
NC_013446:1889500:1899634189963419015321899Comamonas testosteroni CNB-2, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-55216
NC_015422:1694363:1713680171368017156021923Alicycliphilus denitrificans K601 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase6e-53209
NC_008782:2781229:2791280279128027932021923Acidovorax sp. JS42, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-52207
NC_011992:1234610:1246343124634312482651923Acidovorax ebreus TPSY, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-52207
NC_014539:1839840:1859971185997118619111941Burkholderia sp. CCGE1003 chromosome 1, complete sequencePpiC-type peptidyl-prolyl cis-trans isomerase3e-48193
NC_002488:1099975:1143435114343511454021968Xylella fastidiosa 9a5c, complete genomepeptidyl-prolyl cis-trans isomerase7e-48192
NC_010519:1165418:1165418116541811672741857Haemophilus somnus 2336 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-45184
NC_017075:1674758:1674758167475816766651908Rubrivivax gelatinosus IL144, complete genomeputative peptidyl-prolyl cis-trans isomerase PpiD2e-45184
NC_008309:1200245:1216722121672212185781857Haemophilus somnus 129PT, complete genomepeptidyl-prolyl cis-trans isomerase D7e-45182
NC_016632:1049510:1062109106210910640071899Serratia symbiotica str. 'Cinara cedri' chromosome, completepeptidyl-prolyl cis-trans isomerase D3e-37157
NC_014972:3000138:3015278301527830171581881Desulfobulbus propionicus DSM 2032 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-29131
NC_009943:305854:3067093067093086041896Candidatus Desulfococcus oleovorans Hxd3, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-27124
NC_011420:69843:9641296412982801869Rhodospirillum centenum SW, complete genomepeptidyl-prolyl cis-trans isomerse, putative3e-23110
NC_017253:509494:5254815254815273521872Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,peptidyl-prolyl cis-trans isomerase D2e-22107
NC_002528:505951:5245795245795264501872Buchnera aphidicola str. APS (Acyrthosiphon pisum), completepeptidyl-prolyl cis-trans isomerase D2e-22107
NC_017256:515579:5253625253625272301869Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,peptidyl-prolyl cis-trans isomerase D1e-21105
NC_015388:2434922:2462598246259824644871890Desulfobacca acetoxidans DSM 11109 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-21103
NC_003909:1139556:115918111591811160044864Bacillus cereus ATCC 10987, complete genomepeptidylprolyl isomerase4e-21103
NC_017200:1157835:117904211790421179908867Bacillus thuringiensis serovar finitimus YBT-020 chromosome,peptidyl-prolyl isomerase6e-21103
NC_011969:1084000:110399811039981104858861Bacillus cereus Q1 chromosome, complete genomepeptidyl-prolyl isomerase5e-2099.8
NC_011772:1011220:102643810264381027307870Bacillus cereus G9842, complete genomepeptidylprolyl isomerase PrsA11e-1895.5
NC_015731:2148517:2167044216704421683661323Nitrosomonas sp. Is79A3 chromosome, complete genomeChaperone surA1e-1895.1
NC_004722:1008500:102487310248731025733861Bacillus cereus ATCC 14579, complete genomepeptidylprolyl isomerase2e-1894.7
NC_011725:1032500:105122210512221052082861Bacillus cereus B4264 chromosome, complete genomepeptidyl-prolyl isomerase2e-1894.7
NC_010995:2855595:290504129050412905853813Cellvibrio japonicus Ueda107, complete genomepeptidyl-prolyl cis-trans isomerase D3e-1894
NC_009698:3647955:3654515365451536555251011Clostridium botulinum A str. Hall chromosome, complete genomepeptidyl-prolyl isomerase1e-1792
NC_009697:3753527:3757405375740537584151011Clostridium botulinum A str. ATCC 19397 chromosome, completepeptidyl-prolyl isomerase1e-1792
NC_014614:554949:5589805589805600441065Clostridium sticklandii, complete genomeputative foldase lipoprotein (Late stage protein export lipoprotein) precursor1e-1792
NC_010184:1017000:103395610339561034825870Bacillus weihenstephanensis KBAB4, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-1790.9
NC_008767:273759:2773432773432785601218Neisseria meningitidis FAM18, complete genomeputative rotamase2e-1790.9
NC_010634:732016:7329957329957342991305Yersinia pseudotuberculosis PB1/+, complete genomeSurA domain-containing protein7e-1789.7
NC_003143:524755:5247555247555260591305Yersinia pestis CO92, complete genomesurvival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)7e-1789.7
NC_005810:4183297:4199691419969142009951305Yersinia pestis biovar Microtus str. 91001, complete genomepeptidyl-prolyl cis-trans isomerase SurA7e-1789.7
NC_008149:442168:4439584439584452621305Yersinia pestis Nepal516, complete genomesurvival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)7e-1789.7
NC_004088:4073698:4092544409254440938481305Yersinia pestis KIM, complete genomesurvival protein7e-1789.7
NC_006155:751235:7512357512357525391305Yersinia pseudotuberculosis IP 32953, complete genomepeptidyl-prolyl cis-trans isomerase, survival protein7e-1789.7
NC_010465:3919572:3935985393598539372891305Yersinia pseudotuberculosis YPIII, complete genomeSurA domain7e-1789.7
NC_009381:3558018:3574412357441235757161305Yersinia pestis Pestoides F chromosome, complete genomepeptidyl-prolyl cis-trans isomerase SurA7e-1789.7
NC_009708:3862044:3880909388090938822131305Yersinia pseudotuberculosis IP 31758 chromosome, complete genomepeptidyl-prolyl cis-trans isomerase SurA7e-1789.7
NC_014029:576459:5782495782495795531305Yersinia pestis Z176003 chromosome, complete genomesurvival protein SurA (peptidyl-prolyl cis-trans isomerase)7e-1789.7
NC_017154:520400:5204005204005217041305Yersinia pestis D106004 chromosome, complete genomesurvival protein SurA (peptidyl-prolyl cis-trans isomerase)7e-1789.7
NC_017160:520799:5225895225895238931305Yersinia pestis D182038 chromosome, complete genomesurvival protein SurA (peptidyl-prolyl cis-trans isomerase)7e-1789.7
NC_017168:561402:5777965777965791001305Yersinia pestis A1122 chromosome, complete genomepeptidyl-prolyl cis-trans isomerase SurA7e-1789.7
NC_017265:3861259:3862238386223838635421305Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,peptidyl-prolyl cis-trans isomerase C7e-1789.7
NC_017297:3878540:3882418388241838834281011Clostridium botulinum F str. 230613 chromosome, complete genomefoldase protein PrsA6e-1789.7
NC_008150:4601202:4602992460299246042961305Yersinia pestis Antiqua, complete genomesurvival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)7e-1789.4
NC_010516:3845942:3852423385242338534331011Clostridium botulinum B1 str. Okra, complete genomefoldase protein2e-1688.2
NC_010159:770172:7865597865597878631305Yersinia pestis Angola, complete genomechaperone SurA2e-1688.2
NC_009483:2993818:301795230179523018932981Geobacter uraniireducens Rf4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1688.2
NC_010002:1447711:145814514581451459080936Delftia acidovorans SPH-1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-1687
NC_014722:1497244:151555515155551516337783Burkholderia rhizoxinica HKI 454, complete genomepeptidyl-prolyl cis-trans isomerase6e-1686.7
NC_011899:2286884:229515822951582296156999Halothermothrix orenii H 168, complete genomepeptidil-prolyl cis-trans isomerase7e-1686.3
NC_011059:1:1622716227175461320Prosthecochloris aestuarii DSM 271, complete genomeSurA domain1e-1585.5
NC_011725:1182000:118423111842311185088858Bacillus cereus B4264 chromosome, complete genomepeptidyl-prolyl isomerase2e-1585.1
NC_008752:4589119:460003446000344600933900Acidovorax avenae subsp. citrulli AAC00-1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase7e-1582.8
NC_015638:62454:7395773957759872031Lacinutrix sp. 5H-3-7-4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1482.4
NC_015138:4584846:459276245927624593661900Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completePpiC-type peptidyl-prolyl cis-trans isomerase4e-1480.5
NC_015519:488550:504853504853505755903Tepidanaerobacter sp. Re1 chromosome, complete genomeFoldase protein prsA5e-1480.1
NC_009922:2850320:286539528653952866348954Alkaliphilus oremlandii OhILAs, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1378.6
NC_020291:117983:1216791216791227041026Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomefoldase protein PrsA2e-1378.2
NC_016510:1072709:1088029108802910899841956Flavobacterium columnare ATCC 49512 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-1376.6
NC_014328:85290:115121115121115864744Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative foldase-like protein4e-1273.6
NC_009633:168266:179607179607180566960Alkaliphilus metalliredigens QYMF chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-1273.6
NC_013730:7355010:737536773753677375768402Spirosoma linguale DSM 74, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-1273.6
NC_015563:5843703:585966958596695860577909Delftia sp. Cs1-4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-1273.2
NC_011146:2916223:2919097291909729201521056Geobacter bemidjiensis Bem, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase7e-1272.8
NC_009257:1023696:1041274104127410427041431Francisella tularensis subsp. tularensis WY96-3418 chromosome,hypothetical protein2e-1171.2
NC_016599:144844:1563711563711583381968Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase2e-1171.2
NC_016627:3659500:365971136597113660460750Clostridium clariflavum DSM 19732 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase2e-1171.2
NC_008262:297960:311887311887312633747Clostridium perfringens SM101, complete genomePPIC-type PPIASE domain protein3e-1170.9
NC_014560:171931:178636178636179535900Helicobacter pylori SJM180 chromosome, complete genomeputative peptidyl-prolyl cis-trans isomerase4e-1170.5
NC_003030:303812:319051319051319794744Clostridium acetobutylicum ATCC 824, complete genomePeptidil-prolyl cis-trans isomerase9e-1169.3
NC_014654:1:2808328083291051023Halanaerobium sp. 'sapolanicus' chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase9e-1169.3
NC_015687:303810:319048319048319791744Clostridium acetobutylicum DSM 1731 chromosome, complete genomepeptidil-prolyl cis-trans isomerase9e-1169.3
NC_015389:2030154:2052548205254820537621215Coriobacterium glomerans PW2 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase8e-1169.3
NC_009675:2623339:265397026539702654836867Anaeromyxobacter sp. Fw109-5 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase8e-1169.3
NC_017259:480656:5033555033555052321878Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,peptidyl-prolyl cis-trans isomerase D8e-1169.3
NC_014483:39729:4567245672467901119Paenibacillus polymyxa E681 chromosome, complete genomeParvulin-like peptidyl-prolyl isomerase1e-1068.9
NC_008601:1094041:1111638111163811130711434Francisella tularensis subsp. novicida U112, complete genomeouter membrane protein of unknown function1e-1068.6
NC_015425:2690448:270301927030192703762744Clostridium botulinum BKT015925 chromosome, complete genomepeptidil-prolyl cis-trans isomerase3e-1067.4
NC_008261:304000:317140317140317886747Clostridium perfringens ATCC 13124, complete genomepeptidyl-prolyl cis-trans isomerase family protein4e-1067
NC_003366:332500:345779345779346525747Clostridium perfringens str. 13, complete genomehypothetical protein4e-1067
NC_016641:1639356:1644228164422816453401113Paenibacillus terrae HPL-003 chromosome, complete genomeParvulin-like peptidyl-prolyl isomerase4e-1067
NC_014393:187454:192762192762193505744Clostridium cellulovorans 743B chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-0965.5
NC_016632:170000:2154252154252167231299Serratia symbiotica str. 'Cinara cedri' chromosome, completepeptidyl-prolyl cis-trans isomerase2e-0965.1
NC_004061:146862:1468621468621481601299Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomesurvival protein SurA precursor2e-0964.7
NC_010634:166900:187673187673187969297Yersinia pseudotuberculosis PB1/+, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-0964.3
NC_014720:980000:1024714102471410257361023Caldicellulosiruptor kronotskyensis 2002 chromosome, completeppic-type peptidyl-prolyl cis-trans isomerase3e-0964.3
NC_006155:172313:193079193079193360282Yersinia pseudotuberculosis IP 32953, complete genomepeptidyl-prolyl cis-trans isomerase3e-0963.9
NC_011837:3776541:378048837804883781264777Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-0963.9
NC_009706:3845039:384901938490193849762744Clostridium kluyveri DSM 555 chromosome, complete genomefoldase-like protein4e-0963.9
NC_008786:738791:7546417546417557651125Verminephrobacter eiseniae EF01-2, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-0963.5
NC_009654:2940278:294357329435732943851279Marinomonas sp. MWYL1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase6e-0963.2
NC_016599:144844:1592011592011605561356Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase7e-0963.2
NC_014840:286767:307620307620308405786Pantoea sp. At-9b plasmid pPAT9B03, complete sequencenitrogen fixation protein NifM8e-0962.8
NC_017256:144854:1461861461861474781293Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,survival protein SurA9e-0962.4
NC_019940:3518670:354103535410353541922888Thioflavicoccus mobilis 8321 chromosome, complete genomenitrogen fixation protein NifM1e-0862.4
NC_008593:2457594:247010024701002470843744Clostridium novyi NT, complete genomepeptidil-prolyl cis-trans isomerase2e-0861.2
NC_015276:2769000:277422527742252774503279Marinomonas mediterranea MMB-1 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-0860.5
NC_010516:42475:750317503175774744Clostridium botulinum B1 str. Okra, complete genomepeptidil-prolyl isomerase family protein7e-0859.7
NC_012563:36000:693126931270055744Clostridium botulinum A2 str. Kyoto, complete genomepeptidil-prolyl isomerase family protein7e-0859.7
NC_009495:38000:752547525475997744Clostridium botulinum A str. ATCC 3502 chromosome, complete genomepeptidil-prolyl isomerase7e-0859.7
NC_009697:38000:680576805768800744Clostridium botulinum A str. ATCC 19397 chromosome, completepeptidil-prolyl isomerase family protein7e-0859.7
NC_009698:38000:680586805868801744Clostridium botulinum A str. Hall chromosome, complete genomepeptidil-prolyl isomerase7e-0859.7
NC_009699:33452:700837008370826744Clostridium botulinum F str. Langeland chromosome, complete genomepeptidil-prolyl isomerase family protein7e-0859.7
NC_012658:35500:691566915669899744Clostridium botulinum Ba4 str. 657 chromosome, complete genomepeptidil-prolyl isomerase family protein7e-0859.7
NC_017297:33519:702857028571028744Clostridium botulinum F str. 230613 chromosome, complete genomepeptidil-prolyl isomerase family protein7e-0859.7
NC_010520:35845:690946909469837744Clostridium botulinum A3 str. Loch Maree, complete genomepeptidil-prolyl isomerase family protein2e-0757.8
NC_012034:1925983:1953668195366819546901023Anaerocellum thermophilum DSM 6725, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0757.4
NC_015656:2433370:2453370245337024545451176Frankia symbiont of Datisca glomerata chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-0757
NC_016751:1623756:1636380163638016383471968Marinitoga piezophila KA3 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase5e-0757
NC_013194:4964000:496650049665004967333834Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completenitrogen fixation protein NifM1e-0655.8
NC_006351:1886475:189032018903201891054735Burkholderia pseudomallei K96243 chromosome 2, complete sequencerotamase2e-0655.1
NC_010501:3013103:301510130151013015376276Pseudomonas putida W619, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-0655.1
NC_011898:874457:8772858772858783281044Clostridium cellulolyticum H10, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0654.3
NC_007435:566436:570543570543571277735Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative rotamase3e-0654.3
NC_014392:1769803:178411117841111785106996Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0654.3
NC_002937:1548081:155130715513071551591285Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepeptidyl-prolyl cis-trans isomerase C2e-0654.3
NC_008463:1188951:119043211904321191250819Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative peptidyl-prolyl cis-trans isomerase3e-0653.9
NC_000921:1007519:1007519100751910089821464Helicobacter pylori J99, complete genomehypothetical protein4e-0653.9
NC_009075:1906915:191076219107621911424663Burkholderia pseudomallei 668 chromosome II, complete sequencerotamase4e-0653.9
NC_004129:4093610:411516241151624115443282Pseudomonas fluorescens Pf-5, complete genomepeptidyl-prolyl cis-trans isomerase C4e-0653.9
NC_016628:763833:789442789442789720279Vibrio furnissii NCTC 11218 chromosome 2, complete sequencepeptidyl-prolyl cis-trans isomerase C5e-0653.5
NC_016609:7565483:7572764757276475741371374Niastella koreensis GR20-10 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase6e-0653.1