Pre_GI: BLASTP Hits

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Query: NC_004129:4434259:4447747 Pseudomonas fluorescens Pf-5, complete genome

Start: 4447747, End: 4448595, Length: 849

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:6023926:603265360326536033618966Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein3e-122438
NC_007347:1:117721177212521750Ralstonia eutropha JMP134 chromosome 1, complete sequenceHNH endonuclease8e-53207
NC_012796:4075583:416030941603094161064756Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-47190
NC_015576:1442713:144833114483311449320990Mycobacterium sp. JDM601 chromosome, complete genomeHNH endonuclease5e-35148
NC_010334:2131939:213883721388372139706870Shewanella halifaxensis HAW-EB4, complete genomerestriction endonuclease-like protein3e-25115
NC_016812:4246542:426405042640504264781732Sinorhizobium fredii HH103, complete genomehypothetical protein3e-23109
NC_015957:336500:345618345618346355738Streptomyces violaceusniger Tu 4113 chromosome, complete genomeHNH endonuclease2e-21102
NC_016002:1975000:198891019889101989800891Pseudogulbenkiania sp. NH8B, complete genomeHNH endonuclease4e-2098.6
NC_007530:3462624:348605534860553486690636Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein1e-1790.5
NC_016582:6999074:701308770130877013824738Streptomyces bingchenggensis BCW-1 chromosome, complete genomeHNH endonuclease3e-1789.4
NC_009485:5171658:518387251838725184723852Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein4e-1479
NC_013061:1052957:1085865108586510869801116Pedobacter heparinus DSM 2366, complete genomerestriction endonuclease5e-1478.6
NC_008463:4743296:476014847601484760960813Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein3e-1272.8
NC_002516:891000:896416896416897228813Pseudomonas aeruginosa PAO1, complete genomehypothetical protein3e-1272.8
NC_017506:3248724:326074032607403261546807Marinobacter adhaerens HP15 chromosome, complete genomeHNH endonuclease3e-1272.4
NC_009512:3618055:362657136265713627377807Pseudomonas putida F1, complete genomeHNH endonuclease6e-1271.6
NC_014306:1810548:181883218188321819554723Erwinia billingiae Eb661, complete genomepredicted endonuclease1e-1170.5
NC_014655:130636:154602154602155471870Leadbetterella byssophila DSM 17132 chromosome, complete genomehnh endonuclease2e-1169.7
AP010958:922937:935324935324936064741Escherichia coli O103:H2 str. 12009 DNA, complete genomeendonuclease-like protein4e-1168.9
NC_013353:922937:935324935324936064741Escherichia coli O103:H2 str. 12009, complete genomeendonuclease4e-1168.9
NC_013364:928486:940873940873941613741Escherichia coli O111:H- str. 11128, complete genomeendonuclease-like protein4e-1168.9
NC_014216:2538500:255566525556652555979315Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomehypothetical protein5e-1168.6
NC_016822:1431200:144442814444281445171744Shigella sonnei 53G, complete genomeendonuclease3e-1065.9
NC_010622:2385932:2397995239799523992901296Burkholderia phymatum STM815 chromosome 1, complete sequencerestriction endonuclease-like protein5e-1065.1
NC_014973:3452100:346505734650573465821765Geobacter sp. M18 chromosome, complete genomeHNH endonuclease5e-1065.1
NC_021184:1729867:1768097176809717693171221Desulfotomaculum gibsoniae DSM 7213, complete genomeputative restriction endonuclease9e-1064.3
NC_009485:584707:592423592423593280858Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein1e-0964.3
NC_010571:637398:653983653983654768786Opitutus terrae PB90-1, complete genomerestriction endonuclease-like protein1e-0963.5
NC_010322:5293652:530890053089005309745846Pseudomonas putida GB-1 chromosome, complete genomeHNH endonuclease1e-0860.8
NC_013730:3729626:3748609374860937497121104Spirosoma linguale DSM 74, complete genomeHNH endonuclease9e-0960.8
NC_006177:2398482:242404824240482424860813Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein2e-0859.7
NC_008435:604772:626347626347627216870Rhodopseudomonas palustris BisA53, complete genomerestriction endonuclease-like protein4e-0858.9
NC_012673:2064298:2073393207339320744331041Exiguobacterium sp. AT1b, complete genomeHNH endonuclease6e-0858.2
NC_010498:4899167:490781649078164908457642Escherichia coli SMS-3-5, complete genomeHNH endonuclease domain-containing protein9e-0857.8
NC_014220:70490:896678966790407741Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeHNH endonuclease1e-0757.4
NC_014934:219000:229015229015229824810Cellulophaga algicola DSM 14237 chromosome, complete genomehnh endonuclease2e-0756.6
NC_016510:1749967:175462017546201755393774Flavobacterium columnare ATCC 49512 chromosome, complete genomerestriction endonuclease3e-0755.8
NC_009138:1843998:185285518528551853664810Herminiimonas arsenicoxydans, complete genomeputative restriction endonuclease3e-0755.8
NC_009648:5119271:513275851327585133360603Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-0654.3
NC_013361:5580741:558447255844725585122651Escherichia coli O26:H11 str. 11368 chromosome, complete genomeendonuclease1e-0653.9
NC_011283:4966471:497312949731294973767639Klebsiella pneumoniae 342 chromosome, complete genomeHNH endonuclease domain protein1e-0653.9
NC_012731:600518:653235653235653873639Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein2e-0653.1
NC_012560:4929683:493841349384134939156744Azotobacter vinelandii DJ, complete genomehypothetical protein2e-0653.1
NC_021150:4929670:493840049384004939143744Azotobacter vinelandii CA6, complete genomehypothetical protein2e-0653.1
NC_011206:1379068:138427413842741384912639Acidithiobacillus ferrooxidans ATCC 53993, complete genomerestriction endonuclease-like protein3e-0652.4
NC_014206:2807879:281779028177902818551762Geobacillus sp. C56-T3 chromosome, complete genomeHNH endonuclease5e-0652