Pre_GI: BLASTP Hits

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Query: NC_004129:4434259:4444967 Pseudomonas fluorescens Pf-5, complete genome

Start: 4444967, End: 4446841, Length: 1875

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:6023926:6034155603415560360411887Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein01061
NC_010501:734363:7458757458757477431869Pseudomonas putida W619, complete genomeATP/GTP-binding protein, putative01025
NC_018080:2288700:2327730232773023295861857Pseudomonas aeruginosa DK2 chromosome, complete genomeATP/GTP-binding protein0934
NC_002939:1480474:1481813148181314842152403Geobacter sulfurreducens PCA, complete genomehypothetical protein0712
NC_008340:1303607:1315823131582313182042382Alkalilimnicola ehrlichei MLHE-1, complete genomeAAA ATPase0693
NC_014532:2664139:2701341270134127037312391Halomonas elongata DSM 2581, complete genomeK09384 hypothetical protein0684
NC_007963:1190847:1216481121648112188712391Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein0684
NC_008789:1393526:1408456140845614109062451Halorhodospira halophila SL1, complete genomeAAA ATPase8e-177620
NC_017191:641923:6478476478476497991953Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein6e-174611
NC_017188:635901:6418256418256437771953Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein6e-174611
NC_014551:691594:6985026985027004541953Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein6e-174611
NC_017190:678089:6840136840136859651953Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein6e-174611
NC_014298:251783:2727872727872746761890Halalkalicoccus jeotgali B3 plasmid 1, complete sequenceATP/GTP-binding protein1e-171603
NC_020388:1618396:1633490163349016353761887Natronomonas moolapensis 8.8.11 complete genomeprobable ATP/GTP-binding protein5e-162571
NC_006396:2057209:2073736207373620756161881Haloarcula marismortui ATCC 43049 chromosome I, complete sequencereplication factor C1e-157556
NC_020291:4357425:4373621437362143755551935Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein5e-153541
NC_014914:1327245:1346044134604413479991956Taylorella equigenitalis MCE9 chromosome, complete genomeputative ATP/GTP-binding protein3e-150532
NC_015152:2831566:2835689283568928376441956Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein1e-149530
NC_014219:2875051:2890708289070828925491842Bacillus selenitireducens MLS10 chromosome, complete genomeProtein of unknown function DUF20751e-122440
NC_012673:2064298:2074420207442020763121893Exiguobacterium sp. AT1b, complete genomeAAA ATPase8e-119428
NC_013061:1052957:1080898108089810828051908Pedobacter heparinus DSM 2366, complete genomeATP/GTP-binding protein, putative4e-94345
NC_014391:1317957:1327691132769113297092019Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeAAA ATPase4e-73276
NC_010572:1872840:1887514188751418894271914Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP/GTP-binding protein4e-72272
NC_014391:3445672:3452951345295134548491899Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeAAA ATPase1e-71271
NC_017030:5558429:5587744558774455896841941Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein4e-71269
NC_003155:2211087:2220285222028522221681884Streptomyces avermitilis MA-4680, complete genomeATP/GTP-binding protein1e-69264
NC_003888:7337453:7343142734314273450281887Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein3e-68260
NC_018681:2447871:2456294245629424582221929Nocardia brasiliensis ATCC 700358 chromosome, complete genomeAAA ATPase4e-67256
NC_015859:1898693:1907103190710319090221920Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein5e-67256
NC_012490:4425456:4429682442968244315621881Rhodococcus erythropolis PR4, complete genomehypothetical protein8e-67255
NC_016109:5290000:5298123529812353000031881Kitasatospora setae KM-6054, complete genomehypothetical protein4e-66253
NC_015564:2870631:2880701288070128823591659Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeATP/GTP-binding protein4e-54213
NC_015859:1898693:1910292191029219122531962Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein1e-53211
NC_003155:2211087:2217271221727122194662196Streptomyces avermitilis MA-4680, complete genomeATP/GTP-binding protein3e-50200
NC_016109:5290000:5300113530011353021702058Kitasatospora setae KM-6054, complete genomehypothetical protein7e-48192
NC_003888:7337453:7345061734506173472562196Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein2e-46187
NC_017098:986428:9928719928719945591689Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein2e-30134
NC_008497:1111891:1140528114052811417301203Lactobacillus brevis ATCC 367, complete genomehypothetical protein8e-29129
NC_010610:1178430:1181630118163011833541725Lactobacillus fermentum IFO 3956, complete genomehypothetical protein2e-28127
NC_016641:1530905:1534853153485315364841632Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein1e-27125
NC_014724:59000:6403364033652561224Lactobacillus amylovorus GRL 1112 chromosome, complete genomehypothetical protein1e-27125
NC_015214:48999:5482954829560521224Lactobacillus acidophilus 30SC chromosome, complete genomehypothetical protein2e-27124
NC_014106:54587:6024160241614311191Lactobacillus crispatus ST1, complete genomehypothetical protein2e-23110
NC_008529:1042220:1058092105809210595821491Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completehypothetical protein3e-23110
NC_020272:84227:98453984531000991647Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein7e-23109
NC_015428:21724:3735137351390961746Lactobacillus buchneri NRRL B-30929 chromosome, complete genomehypothetical protein1e-22108
NC_014307:1:349793497935548570Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein3e-22107
NC_008698:903759:9144829144829162841803Thermofilum pendens Hrk 5, complete genomehypothetical protein5e-22106
NC_015738:2652500:2662178266217826638871710Eggerthella sp. YY7918, complete genomehypothetical protein6e-22106
NC_008054:201075:2271582271582284051248Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein2e-20101
NC_013887:1462918:1465304146530414670101707Methanocaldococcus sp. FS406-22 chromosome, complete genomeProtein of unknown function DUF20756e-2099.8
NC_017221:1222963:1231594123159412337682175Bifidobacterium longum subsp. longum KACC 91563 chromosome,hypothetical protein2e-1894.4
NC_011593:1622260:1630762163076216329362175Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein5e-1893.6
NC_017219:1622050:1630552163055216327112160Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein4e-1893.6
NC_013714:1521404:1531629153162915334131785Bifidobacterium dentium Bd1, complete genomehypothetical protein4e-1893.6
NC_015052:1094825:1104130110413011062892160Bifidobacterium longum subsp. infantis 157F, complete genomehypothetical protein2e-1791.3
NC_010816:621849:6322106322106343692160Bifidobacterium longum DJO10A, complete genomehypothetical protein2e-1791.3
NC_008618:1206157:1213113121311312152512139Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein2e-1584.3
NC_014616:1065500:1075397107539710771271731Bifidobacterium bifidum S17 chromosome, complete genomehypothetical protein2e-1481.3
NC_013714:1376500:1384621138462113871582538Bifidobacterium dentium Bd1, complete genomehypothetical protein6e-1066.2
NC_013198:394000:450928450928451500573Lactobacillus rhamnosus GG, complete genomehypothetical protein2e-0964.7