Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4386748 Pseudomonas fluorescens Pf-5, complete genome

Start: 4386748, End: 4387281, Length: 534

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002927:3716894:375919237591923759698507Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-1685.9
NC_011415:2277559:230675623067562307325570Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-1683.2
CP002797:4812799:482840048284004828969570Escherichia coli NA114, complete genomeHypothetical protein2e-1581.6
NC_009801:2193000:221900422190042219573570Escherichia coli E24377A, complete genomehypothetical protein3e-1581.3
NC_009641:1105075:110507511050751105554480Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein8e-1270.1
NC_013450:854790:862162862162862641480Staphylococcus aureus subsp. aureus ED98, complete genomehypothetical protein3e-1168.2
NC_009089:1093832:109776810977681098283516Clostridium difficile 630, complete genomephage protein8e-1166.6
NC_014722:846084:851927851927852433507Burkholderia rhizoxinica HKI 454, complete genomephage protein2e-1065.1
NC_008258:269806:282426282426282908483Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-1063.9
NC_003210:2380419:239431723943172394793477Listeria monocytogenes EGD-e, complete genomehypothetical protein4e-0960.8
NC_014652:801653:803311803311803793483Caldicellulosiruptor hydrothermalis 108 chromosome, completegp157 family protein1e-0859.7
NC_009706:3341250:335375833537583354246489Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein9e-0959.7
NC_011837:3272752:328526032852603285748489Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-0959.7
NC_012214:1974500:197793619779361978499564Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-0858.9
NC_017328:303987:314367314367314807441Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-0858.5
NC_003212:2293425:231435323143532314829477Listeria innocua Clip11262, complete genomehypothetical protein5e-0857.4
NC_017353:887581:895261895261895746486Staphylococcus lugdunensis N920143, complete genomesiphovirus Gp157 family protein2e-0755.5
NC_009674:2985878:301573530157353016217483Bacillus cytotoxicus NVH 391-98 chromosome, complete genomesiphovirus Gp157 family protein2e-0755.5
NC_013766:1293144:130351413035141303993480Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-0755.1
NC_013768:1260317:127021812702181270697480Listeria monocytogenes 08-5923, complete genomehypothetical protein2e-0755.1
NC_020164:1677452:170934617093461709831486Staphylococcus warneri SG1, complete genomehypothetical protein7e-0753.5
NC_013171:896802:900680900680901147468Anaerococcus prevotii DSM 20548, complete genomeGp157 family protein2e-0652
NC_011660:366000:366012366012366488477Listeria monocytogenes HCC23 chromosome, complete genomehypothetical protein2e-0651.6
NC_008555:1204000:121776512177651218244480Listeria welshimeri serovar 6b str. SLCC5334, complete genomehypothetical protein7e-0650.1
NC_013282:1200993:120990712099071210389483Cronobacter turicensis, complete genomehypothetical protein1e-0549.7