Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4385975 Pseudomonas fluorescens Pf-5, complete genome

Start: 4385975, End: 4386721, Length: 747

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:2277559:2304543230454323067592217Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-39161
NC_009801:2193000:2216941221694122190072067Escherichia coli E24377A, complete genomehypothetical protein4e-39161
CP002797:4812799:4828966482896648311822217Escherichia coli NA114, complete genomeHypothetical protein6e-39160
NC_012214:1974500:1978496197849619807392244Erwinia pyrifoliae Ep1/96, complete genomeSimilarities with exodeoxyribonuclease VIII4e-38158