Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4379576 Pseudomonas fluorescens Pf-5, complete genome

Start: 4379576, End: 4380364, Length: 789

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:2328491:234971423497142350442729Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, Cro/CI family3e-81301
NC_010501:4379920:438793643879364388715780Pseudomonas putida W619, complete genomeputative phage repressor3e-52205
NC_011770:860944:870555870555871343789Pseudomonas aeruginosa LESB58, complete genometranscriptional regulator8e-51200
NC_007954:3887488:389894838989483899637690Shewanella denitrificans OS217, complete genometransciptional regulator4e-40164
NC_007712:1516589:153094915309491531668720Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-36152
NC_011770:1431740:144568614456861446441756Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-35150
NC_009665:3869904:389559738955973896322726Shewanella baltica OS185 chromosome, complete genomeputative phage repressor6e-32137
NC_007712:1516589:153299615329961533706711Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein5e-28124
NC_013361:3287671:329508932950893295796708Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI5e-22104
NC_005773:5310339:531033953103395311070732Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, Cro/CI family2e-21103
NC_015379:6023926:603163860316386032267630Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative regulatory protein2e-21103
NC_016830:5994494:600195060019506002681732Pseudomonas fluorescens F113 chromosome, complete genomecro ci family transcriptional regulator9e-22103
NC_011770:2690501:270216227021622702968807Pseudomonas aeruginosa LESB58, complete genomecI repressor protein5e-2098.2
NC_009778:959982:977343977343978032690Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-2097.8
NC_007712:3067000:309927530992753099997723Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator1e-1893.6
NC_010645:406794:414160414160415113954Bordetella avium 197N, complete genomephage repressor protein4e-1168.6
NC_017986:3283433:329590632959063296607702Pseudomonas putida ND6 chromosome, complete genomehypothetical protein7e-1167.8
NC_014640:4951076:4958381495838149594841104Achromobacter xylosoxidans A8 chromosome, complete genomepeptidase S24-like family protein1e-1067.4
NC_014972:2798670:281793528179352818681747Desulfobulbus propionicus DSM 2032 chromosome, complete genomeputative phage repressor3e-0962.8
NC_017506:3248724:325658932565893257266678Marinobacter adhaerens HP15 chromosome, complete genomephage repressor1e-0860.5
NC_007712:2028500:206857220685722069294723Sodalis glossinidius str. 'morsitans', complete genomephage repressor4e-0755.5
NC_009999:38832:459184591846562645Shewanella baltica OS195 plasmid pS19502, complete sequenceputative phage repressor7e-0754.7
NC_004116:1276791:127730112773011277993693Streptococcus agalactiae 2603V/R, complete genomerepressor protein, putative3e-0652.8