Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4366896 Pseudomonas fluorescens Pf-5, complete genome

Start: 4366896, End: 4368359, Length: 1464

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:2565605:2565605256560525669931389Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein5e-103375
NC_010554:539122:5485625485625499321371Proteus mirabilis HI4320, complete genomephage protein8e-90331
NC_010322:3831444:3848714384871438501381425Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein2e-65250
NC_002927:2338549:2354562235456223559801419Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-54214
NC_002927:3716894:3743648374364837450661419Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-54214
NC_017223:3608749:3633999363399936354171419Bordetella pertussis CS chromosome, complete genomehypothetical protein2e-54213
NC_002929:3568106:3593814359381435952321419Bordetella pertussis Tohama I, complete genomehypothetical protein2e-54213
NC_003911:1078949:1087398108739810887801383Silicibacter pomeroyi DSS-3, complete genomehypothetical protein2e-37157
NC_012660:3116500:3138470313847031399301461Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein2e-27124
NC_014306:3524980:3554569355456935559691401Erwinia billingiae Eb661, complete genomePutative structural phage protein2e-1790.5
NC_014006:850763:8605348605348619461413Sphingobium japonicum UT26S chromosome 1, complete genomeputative phage structural protein6e-1685.9
NC_009656:2422083:2442941244294124442541314Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein9e-1685.5
NC_013850:2182337:2216783221678322182071425Klebsiella variicola At-22 chromosome, complete genomehypothetical protein8e-1272.4
NC_008563:1475500:1491390149139014927961407Escherichia coli APEC O1, complete genomehypothetical protein4e-1170.1
NC_009648:1541699:1572040157204015734641425Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-0963.2
NC_015663:4522109:4522109452210945235331425Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-0860.5