Pre_GI: BLASTP Hits

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Query: NC_004129:3965947:3970812 Pseudomonas fluorescens Pf-5, complete genome

Start: 3970812, End: 3971291, Length: 480

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:3068495:307945330794533079932480Pseudomonas putida F1, complete genomeputative transcriptional regulator, MerR family2e-66250
NC_017986:5467279:547330454733045473783480Pseudomonas putida ND6 chromosome, complete genomeMerR family transcriptional regulator5e-66249
NC_011001:2327633:234049923404992340948450Burkholderia cenocepacia J2315 chromosome 2, complete sequenceMerR family regulatory protein6e-39159
NC_010125:74904:971789717897711534Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, MerR family3e-38157
NC_017506:1785872:178587217858721786288417Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator7e-37152
NC_003296:140889:159311159311159769459Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN3e-35147
NC_011001:2327633:233684423368442337317474Burkholderia cenocepacia J2315 chromosome 2, complete sequenceMerR family regulatory protein9e-33139
NC_011992:1213726:121847812184781218864387Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family4e-1373.9
NC_017904:3084872:309662730966273097076450Mycobacterium sp. MOTT36Y chromosome, complete genometranscriptional regulator5e-1373.6
NC_015146:144565:162656162656163048393Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, completetranscriptional regulator5e-1270.1
NC_014210:144036:146517146517146933417Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, MerR family6e-1166.6
NC_010602:2244729:233249123324912332883393Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'MerR family transcriptional regulator2e-1065.1
NC_010842:2310756:233787823378782338270393Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosometranscription regulator, SoxR-related2e-1065.1
NC_008712:250240:253388253388253939552Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, MerR family4e-1063.9
NC_009425:63709:883968839688821426Enterobacter sp. 638 plasmid pENTE01, complete sequenceMerR family transcriptional regulator1e-0962
NC_011753:3088952:310870531087053109169465Vibrio splendidus LGP32 chromosome 1, complete genometranscriptional regulator2e-0962
NC_013440:3870697:388797238879723888379408Haliangium ochraceum DSM 14365, complete genometranscriptional regulator, MerR family2e-0962
NC_007645:3478630:349719834971983497557360Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator3e-0961.2
NC_016616:1091606:109800110980011098429429Dechlorosoma suillum PS chromosome, complete genomeCu(I)-responsive transcriptional regulator4e-0960.5
NC_015740:2998500:300896630089663009400435Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative MerR family transcriptional regulator4e-0960.5
NC_015671:3093596:310524731052473105645399Cellvibrio gilvus ATCC 13127 chromosome, complete genomeMerR family transcriptional regulator6e-0960.1
NC_010602:2244729:227620322762032276586384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'MerR family transcriptional regulator6e-0960.1
NC_010602:2244729:231391023139102314293384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'MerR family transcriptional regulator6e-0960.1
NC_010842:2310756:231929623192962319679384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeSoxR-related transcriptional regulator6e-0960.1
NC_010842:2250119:228158922815892281972384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeSoxR-related transcriptional regulator6e-0960.1
NC_015671:255808:293007293007293426420Cellvibrio gilvus ATCC 13127 chromosome, complete genomeMerR family transcriptional regulator1e-0859.3
NC_008750:1253354:126126912612691261733465Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family9e-0959.3
NC_016614:686887:705585705585705971387Vibrio sp. EJY3 chromosome 2, complete sequenceCueR family transcriptional regulator2e-0858.5
NC_017506:93494:947149471495127414Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator2e-0858.2
NC_011420:69843:929229292293323402Rhodospirillum centenum SW, complete genomeHTH-type transcriptional regulator HmrR4e-0857.4
NC_018697:1343756:138299313829931383400408Cycloclasticus sp. P1 chromosome, complete genomeCd(II)/Pb(II)-responsive transcriptional regulator4e-0857.4
NC_010519:1963256:197166419716641972068405Haemophilus somnus 2336 chromosome, complete genomeMerR family transcriptional regulator4e-0857
NC_013947:4979000:498490749849074985344438Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, MerR family9e-0856.2
NC_010505:2690939:269694426969442697417474Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, MerR family9e-0855.8
NC_009434:3611738:369111736911173691755639Pseudomonas stutzeri A1501, complete genometranscriptional regulator1e-0755.8
NC_011663:2568190:258565425856542586055402Shewanella baltica OS223 chromosome, complete genomeMerR family transcriptional regulator1e-0755.8
CP002185:3627992:365167436516743652099426Escherichia coli W, complete genomeDNA-binding transcriptional activator in response to Zn(II)1e-0755.5
NC_016109:4753493:475499747549974755362366Kitasatospora setae KM-6054, complete genomeputative MerR family transcriptional regulator1e-0755.5
NC_014836:2919508:130781307813485408Desulfurispirillum indicum S5 chromosome, complete genomeCd(II)/Pb(II)-responsive transcriptional regulator2e-0755.1
NC_016830:3230939:323708232370823237528447Pseudomonas fluorescens F113 chromosome, complete genomeMerR family transcriptional regulator2e-0755.1
NC_007498:1848437:186231018623101862723414Pelobacter carbinolicus DSM 2380, complete genomeputative heavy metal regulator HmrR2e-0755.1
NC_013508:3387272:338925733892573389718462Edwardsiella tarda EIB202, complete genomezinc-responsive transcriptional regulator2e-0754.7
NC_011138:3182807:319814931981493198544396Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator2e-0754.7
NC_013446:3520500:352455735245573524946390Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family2e-0754.7
NC_016113:994469:100038710003871000770384Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceMerR family transcriptional regulator3e-0754.7
NC_011901:491783:501562501562501963402Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeMerR family transcriptional regulator3e-0754.3
NC_010571:5650806:565551656555165655920405Opitutus terrae PB90-1, complete genometranscriptional regulator, MerR family3e-0754.3
NC_009438:236424:250662250662251126465Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator3e-0754.3
NC_014831:1906691:193368319336831934192510Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, MerR family3e-0754.3
NC_008750:450233:454399454399454806408Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family3e-0754.3
NC_009438:212476:216839216839217246408Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator3e-0754.3
NC_009438:236424:239957239957240364408Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator3e-0754.3
NC_016111:5369414:537814953781495378634486Streptomyces cattleya NRRL 8057, complete genomeHTH-type transcriptional activator soxR-like protein3e-0754.3
NC_009040:43791:599605996060382423Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeputative transcriptional regulator, MerR family3e-0754.3
NC_009720:3210387:322263632226363223058423Xanthobacter autotrophicus Py2, complete genomeMerR family transcriptional regulator3e-0754.3
NC_012982:711122:733630733630734016387Hirschia baltica ATCC 49814, complete genometranscriptional regulator, MerR family4e-0753.9
NC_017506:3717261:373431737343173734760444Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator4e-0753.9
NC_009668:445134:485515485515485955441Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator4e-0753.9
NC_013446:2820000:284846928484692848915447Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family4e-0753.9
NC_002947:4362271:436476643647664365137372Pseudomonas putida KT2440, complete genometranscriptional regulator, MerR family6e-0753.5
NC_004129:2609189:262818226281822628571390Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, MerR family6e-0753.5
NC_010571:5650806:5651894565189456574565563Opitutus terrae PB90-1, complete genome5e-0753.5
NC_011206:2040000:205561320556132056089477Acidithiobacillus ferrooxidans ATCC 53993, complete genometranscriptional regulator, MerR family5e-0753.5
NC_011761:2131911:216757121675712168047477Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeCd(II)/Pb(II)-responsive transcriptional regulator5e-0753.5
NC_009668:529175:531374531374531790417Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator6e-0753.1
NC_008750:1253354:126959512695951270020426Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family6e-0753.1
NC_007952:1587500:159836415983641598771408Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, MerR family6e-0753.1
NC_007951:3655088:366296836629683663375408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family6e-0753.1
NC_016048:1930089:1940209194020919416661458Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator6e-0753.1
NC_007951:3655088:367436536743653674772408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family6e-0753.1
NC_007951:1711223:172356517235651723972408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family6e-0753.1
NC_006363:36959:583585835858759402Nocardia farcinica IFM 10152 plasmid pNF2, complete sequenceputative transcriptional regulator8e-0752.8
NC_002927:2636694:265893026589302659364435Bordetella bronchiseptica RB50, complete genomeputative MerR-family transcriptional regulator1e-0652.4
NC_014964:1608575:161941216194121619804393Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeregulatory protein MerR1e-0652.4
NC_010321:1616362:162719916271991627591393Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeMerR family transcriptional regulator1e-0652.4
NC_011312:3060371:307927830792783079697420Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetranscriptional regulator1e-0652.4
NC_018868:619113:639254639254639721468Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeMerR family transcriptional regulator1e-0652.4
NC_000911:3075896:309124430912443091657414Synechocystis sp. PCC 6803, complete genomemercuric resistance operon regulatory protein2e-0652
NC_017039:3073724:308907230890723089485414Synechocystis sp. PCC 6803 substr. PCC-P, complete genomemercuric resistance operon regulatory protein MerR2e-0652
NC_017052:3073713:308906130890613089474414Synechocystis sp. PCC 6803 substr. PCC-N, complete genomemercuric resistance operon regulatory protein MerR2e-0652
NC_017277:3083494:309006130900613090474414Synechocystis sp. PCC 6803, complete genomemercuric resistance operon regulatory protein MerR2e-0652
NC_008347:174000:190633190633191043411Maricaulis maris MCS10, complete genomeputative transcriptional regulator, MerR family1e-0652
NC_008347:2515921:253804725380472538490444Maricaulis maris MCS10, complete genometranscriptional regulator, MerR family2e-0651.6
NC_016147:623666:638016638016638429414Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative transcriptional regulator2e-0651.6
NC_021172:169215:193706193706194128423Hyphomicrobium denitrificans 1NES1, complete genomeMerR family transcriptional regulator2e-0651.6
NC_009439:918534:924888924888925319432Pseudomonas mendocina ymp, complete genomeMerR family transcriptional regulator2e-0651.6
NC_015186:2884866:288486628848662885333468Acidiphilium multivorum AIU301, complete genomeMerR family transcriptional regulator2e-0651.6
NC_014815:5888934:589270858927085893130423Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, merr family2e-0651.6
NC_011992:2279752:230185023018502302353504Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family2e-0651.6
NC_018868:619113:626325626325626735411Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeMerR family transcriptional regulator3e-0651.2
NC_016114:1:137711377114121351Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeMerR family transcriptional regulator3e-0651.2
NC_013169:2423863:244360324436032444019417Kytococcus sedentarius DSM 20547, complete genometranscriptional regulator, MerR family3e-0651.2
NC_010410:3719599:372359937235993724003405Acinetobacter baumannii AYE, complete genomeputative transcriptional regulator (MerR family)2e-0651.2
NC_014209:787535:798612798612799004393Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,transcriptional regulator, MerR family2e-0651.2
NC_013921:755800:771016771016771408393Thermoanaerobacter italicus Ab9 chromosome, complete genometranscriptional regulator, MerR family2e-0651.2
NC_011992:1179084:119333011933301193809480Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family2e-0651.2
NC_009434:695582:762792762792763244453Pseudomonas stutzeri A1501, complete genometranscriptional regulator CadR3e-0650.8
NC_011138:3182807:320451732045173204903387Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator3e-0650.8
NC_013446:2820000:282079828207982821217420Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family6e-0650.1
NC_009434:3611738:370624537062453706643399Pseudomonas stutzeri A1501, complete genomeMerR family transcriptional regulator6e-0650.1
NC_009656:115390:122118122118122516399Pseudomonas aeruginosa PA7 chromosome, complete genomeHg(II)-responsive transcriptional regulator6e-0650.1
NC_012914:5194791:521082752108275211189363Paenibacillus sp. JDR-2, complete genometranscriptional regulator, MerR family5e-0650.1
NC_014151:4021394:404725240472524047692441Cellulomonas flavigena DSM 20109 chromosome, complete genometranscriptional regulator, MerR family7e-0649.7
NC_019897:2959002:297139429713942972320927Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator8e-0649.7
NC_010611:208268:225980225980226384405Acinetobacter baumannii ACICU, complete genomepredicted transcriptional regulator9e-0649.3
NC_018697:1343756:136580113658011366259459Cycloclasticus sp. P1 chromosome, complete genometranscriptional regulator1e-0549.3