Pre_GI: BLASTP Hits

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Query: NC_004129:2609189:2627037 Pseudomonas fluorescens Pf-5, complete genome

Start: 2627037, End: 2628107, Length: 1071

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013446:3520500:3525026352502635260991074Comamonas testosteroni CNB-2, complete genomeMale sterility-like protein9e-172602
NC_002947:4362271:4365210436521043663071098Pseudomonas putida KT2440, complete genomehypothetical protein4e-108391
NC_016603:3259432:3275068327506832769331866Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeputative bifunctional protein6e-26118
NC_017171:155836:1712731712731731381866Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeUDP-glucose 4-epimerase9e-26117
NC_017162:158289:1735821735821754471866Acinetobacter baumannii 1656-2 chromosome, complete genomeputative NAD dependent epimerase/dehydratase family protein9e-26117
NC_017387:147906:1633421633421652071866Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeputative NAD dependent epimerase/dehydratase family protein2e-25116
NC_010410:3777076:3777836377783637797011866Acinetobacter baumannii AYE, complete genomeputative bifunctional protein [Includes: NAD-dependent epimerase/dehydratase; Carboxylesterase]2e-25116
NC_011586:164746:1801851801851820501866Acinetobacter baumannii AB0057 chromosome, complete genomeNAD dependent epimerase/dehydratase family2e-25116
NC_011595:3607402:3608162360816236100271866Acinetobacter baumannii AB307-0294, complete genomeUDP-glucose 4-epimerase2e-25116
NC_010611:154307:1697901697901716551866Acinetobacter baumannii ACICU, complete genomeputative NAD dependent epimerase/dehydratase family protein2e-25116
NC_014259:3984568:3985329398532939871821854Acinetobacter sp. DR1 chromosome, complete genomeUDP-glucose 4-epimerase1e-24114
NC_009085:131000:1465631465631483081746Acinetobacter baumannii ATCC 17978, complete genomehypothetical protein6e-21102
NC_016023:2265000:2265140226514022662401101Bacillus coagulans 36D1 chromosome, complete genomeMale sterility domain-containing protein4e-1582.4
NC_017506:1222000:1260252126025212622912040Marinobacter adhaerens HP15 chromosome, complete genomeshort chain dehydrogenase7e-1375.1
NC_004757:2412161:2421663242166324227781116Nitrosomonas europaea ATCC 19718, complete genomepossible polyketide synthase5e-1065.5
NC_009953:3426344:3426344342634434274441101Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein1e-0964.3
NC_010803:483713:4847684847684857691002Chlorobium limicola DSM 245, complete genomeNAD-dependent epimerase/dehydratase2e-0963.5
NC_016112:1735044:1735044173504417397084665Methylomicrobium alcaliphilum chromosome, complete genomenon-ribosomal peptide synthetase2e-0963.5
NC_008095:5585346:5600883560088356054304548Myxococcus xanthus DK 1622, complete genomenon-ribosomal peptide synthase MxaA5e-0962.4
NC_010505:2690939:2713244271324427142991056Methylobacterium radiotolerans JCM 2831, complete genomeMale sterility domain protein6e-0962
NC_008781:3688965:3707607370760737096011995Polaromonas naphthalenivorans CJ2, complete genomeMale sterility C-terminal domain1e-0861.2
NC_015660:3518931:3533078353307835341151038Geobacillus thermoglucosidasius C56-YS93 chromosome, completeMale sterility domain-containing protein2e-0860.1
NC_011000:3409126:341204434120443413021978Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative nucleotide sugar epimerase/dehydratase5e-0858.9
NC_014394:3036758:304178930417893042733945Gallionella capsiferriformans ES-2 chromosome, complete genomeNAD-dependent epimerase/dehydratase5e-0858.9
NC_015379:1887275:191240419124041913369966Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,NAD-dependent epimerase/dehydratase7e-0858.5
NC_009138:1138917:116755111675511168489939Herminiimonas arsenicoxydans, complete genomeUDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase)1e-0757.4
NC_014733:107394:1137211137211147431023Methylovorus sp. MP688 chromosome, complete genomenad-dependent epimerase/dehydratase1e-0757.8
NC_009380:4702815:4720747472074747218471101Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein1e-0757.8
NC_008463:2017607:203919620391962040149954Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative NAD dependent epimerase/dehydratase1e-0758.2
NC_012918:3009211:301938130193813020346966Geobacter sp. M21 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0654.7
NC_014973:1767798:177259617725961773558963Geobacter sp. M18 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0654.3
NC_011283:1901229:1907918190791819090601143Klebsiella pneumoniae 342 chromosome, complete genomethioester reductase domain-containing protein2e-0653.5
NC_019673:4974422:4974422497442249807186297Saccharothrix espanaensis DSM 44229 complete genomeNon-ribosomal peptide synthetase5e-0652.4
NC_020126:7896447:7898342789834279009512610Myxococcus stipitatus DSM 14675, complete genomehypothetical protein7e-0652
NC_009439:2038303:206568020656802066642963Pseudomonas mendocina ymp, complete genomeNAD-dependent epimerase/dehydratase7e-0652