Pre_GI: BLASTP Hits

Some Help

Query: NC_004129:2609189:2621676 Pseudomonas fluorescens Pf-5, complete genome

Start: 2621676, End: 2623190, Length: 1515

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020050:296702:2967022967023003733672Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialWD40 repeat-containing protein7e-21102
NC_008095:5062491:5071301507130150755004200Myxococcus xanthus DK 1622, complete genomeWD domain, G-beta repeat protein3e-1790.1
NC_010547:31444:3333833338369073570Cyanothece sp. ATCC 51142 chromosome linear, complete sequenceWD-repeat protein6e-1789.4
NC_009925:6097000:6097175609717561007503576Acaryochloris marina MBIC11017, complete genomeWD-repeat protein1e-1584.7
NC_008312:6072000:6080614608061460854134800Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat4e-1583.6
NC_009523:1101214:1105992110599211080822091Roseiflexus sp. RS-1 chromosome, complete genomeWD-40 repeat-containing protein4e-1480.1
NC_005125:2107088:2109291210929121128843594Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein4e-1479.7
NC_011831:2213306:2222024222202422263884365Chloroflexus aggregans DSM 9485, complete genomeNB-ARC domain protein3e-1377.4
NC_013757:1212308:1222308122230812259613654Geodermatophilus obscurus DSM 43160, complete genomeWD40 repeat, subgroup3e-1377
NC_005125:2811986:2811986281198628155673582Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein2e-1274.7
NC_015510:2907815:2934315293431529377043390Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome(myosin heavy-chain) kinase2e-1274.3
NC_014391:277555:2775552775552816584104Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeWD40 repeat, subgroup2e-1273.9
NC_009927:253250:2602922602922647464455Acaryochloris marina MBIC11017 plasmid pREB2, complete sequenceWD repeat protein1e-1172
NC_019673:1988853:1988853198885319931334281Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1170.9
NC_013510:3640776:3645961364596136514565496Thermomonospora curvata DSM 43183, complete genomemetallophosphoesterase3e-1170.5
NC_016582:7699420:7712533771253377150822550Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative WD-40 repeat protein4e-1170.1
NC_013757:3613438:3632186363218636362594074Geodermatophilus obscurus DSM 43160, complete genomeWD40 repeat, subgroup5e-1169.7
NC_008312:3793760:3799246379924638036914446Trichodesmium erythraeum IMS101, complete genomepeptidase C14, caspase catalytic subunit p208e-1168.9
NC_008312:5637974:5650391565039156523851995Trichodesmium erythraeum IMS101, complete genomeserine/threonine protein kinase with WD40 repeats1e-1068.6
NC_008278:6885254:6892943689294368965633621Frankia alni ACN14a, complete genomehypothetical protein; putative WD-repeat protein4e-1067
NC_008312:7099417:7107744710774471122764533Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat4e-1066.6
NC_010572:802269:8119478119478158133867Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical WD-repeat protein6e-1066.2
NC_009523:4222696:4238984423898442427123729Roseiflexus sp. RS-1 chromosome, complete genomeprotein kinase2e-0964.7
NC_013510:1614000:1624692162469216257261035Thermomonospora curvata DSM 43183, complete genomeWD-40 repeat protein3e-0963.5
NC_014623:9976000:9991083999108399944873405Stigmatella aurantiaca DW4/3-1 chromosome, complete genomewd-repeat containing protein4e-0963.5
NC_009925:1184442:1184442118444211880053564Acaryochloris marina MBIC11017, complete genomeWD-repeat protein5e-0963.2
NC_019771:2783471:2786531278653127912674737Anabaena cylindrica PCC 7122, complete genomeWD-40 repeat-containing protein4e-0963.2
NC_005125:760721:7698147698147748295016Gloeobacter violaceus PCC 7421, complete genomeWD-40 repeat protein5e-0962.8
NC_007333:39579:6361363613658412229Thermobifida fusca YX, complete genomeTyrosine protein kinase:WD-40 repeat:Serine/threonine protein kinase6e-0962.8
NC_016887:1949927:1964009196400919672783270Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein1e-0862
NC_007643:1504758:1512945151294515174204476Rhodospirillum rubrum ATCC 11170, complete genomeWD-40 repeat2e-0861.2
NC_013510:465188:4773674773674795892223Thermomonospora curvata DSM 43183, complete genomeserine/threonine protein kinase with WD40 repeats2e-0861.2
NC_019892:3366463:3385856338585633872651410Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD40 repeat-containing protein3e-0860.5
NC_019892:3366463:3383062338306233851912130Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD40 repeat-containing protein3e-0860.5
NC_016582:5769080:5776494577649457803783885Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative WD-40 repeat protein5e-0859.7
NC_014666:7838500:7857542785754278591251584Frankia sp. EuI1c chromosome, complete genomeWD40 repeat, subgroup5e-0859.7
NC_017030:5558429:5589906558990655934423537Corallococcus coralloides DSM 2259 chromosome, complete genomeWD domain-/G-beta repeat-containing protein5e-0859.7
NC_015510:2209663:2210628221062822135222895Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeWD40 repeat-containing protein6e-0859.7
NC_013510:1614000:1626072162607216271061035Thermomonospora curvata DSM 43183, complete genomeWD-40 repeat protein6e-0859.3
NC_003888:4251867:4252857425285742578875031Streptomyces coelicolor A3(2), complete genomeWD-40 repeat protein1e-0758.5
NC_011884:1413831:1430871143087114327811911Cyanothece sp. PCC 7425, complete genomeserine/threonine protein kinase with WD40 repeats1e-0758.5
NC_009523:4222696:4247632424763242516243993Roseiflexus sp. RS-1 chromosome, complete genomeprotein kinase2e-0757.8
NC_005125:2393701:2400665240066524058305166Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein3e-0757
NC_014623:243593:2557342557342576351902Stigmatella aurantiaca DW4/3-1 chromosome, complete genomewd-repeat containing protein5e-0756.2
NC_009921:8215996:8240669824066982428822214Frankia sp. EAN1pec, complete genomeserine/threonine protein kinase with WD40 repeats1e-0655.1
NC_013131:7945280:7989654798965479936584005Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, XRE family1e-0655.1
NC_014623:243593:2508882508882525971710Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein1e-0654.7
NC_008278:1876435:1883668188366818852301563Frankia alni ACN14a, complete genomehypothetical protein2e-0654.3
NC_021184:2936244:2952476295247629535791104Desulfotomaculum gibsoniae DSM 7213, complete genomeWD40 repeat-containing protein4e-0653.5
NC_018681:5551000:5563833556383355678674035Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein6e-0652.8
NC_015656:2900730:2913120291312029147451626Frankia symbiont of Datisca glomerata chromosome, complete genomeWD40 repeat-containing protein6e-0652.8
NC_016582:7699420:771208177120817712584504Streptomyces bingchenggensis BCW-1 chromosome, complete genomeWD-40 repeat-containing protein8e-0652.4