Pre_GI: BLASTP Hits

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Query: NC_004129:2328491:2349714 Pseudomonas fluorescens Pf-5, complete genome

Start: 2349714, End: 2350442, Length: 729

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014640:4951076:4958381495838149594841104Achromobacter xylosoxidans A8 chromosome, complete genomepeptidase S24-like family protein1e-0963.5
NC_009655:1357486:136895013689501369636687Actinobacillus succinogenes 130Z chromosome, complete genomeputative phage repressor7e-0651.2
NC_017192:1885457:188920518892051889891687Arcobacter sp. L, complete genomephage repressor protein3e-1375.5
NC_010645:406794:414160414160415113954Bordetella avium 197N, complete genomephage repressor protein2e-1065.9
NC_007963:1552761:156075215607521561435684Chromohalobacter salexigens DSM 3043, complete genomeputative phage repressor5e-0754.7
NC_010002:4508467:451639745163974517047651Delftia acidovorans SPH-1, complete genomeputative phage repressor4e-0755.1
NC_014972:2798670:281793528179352818681747Desulfobulbus propionicus DSM 2032 chromosome, complete genomeputative phage repressor2e-1376.3
NC_015663:4522109:453774545377454538440696Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage repressor protein CI2e-0756.2
NC_009778:959982:977343977343978032690Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-27122
CU928145:824367:827354827354828109756Escherichia coli 55989 chromosome, complete genomeRegulatory protein CI from bacteriophage origin2e-0962.8
NC_011748:824367:827354827354828109756Escherichia coli 55989, complete genomeRegulatory protein CI from bacteriophage origin2e-0962.8
NC_011353:2957962:297528529752852975899615Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerepressor protein8e-0754.3
NC_013008:2910567:293015629301562930770615Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephage-related repressor protein8e-0754.3
NC_013361:3287671:329508932950893295796708Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI2e-31136
NC_013941:699286:703945703945704559615Escherichia coli O55:H7 str. CB9615 chromosome, complete genomerepressor protein8e-0754.3
NC_011415:600375:616589616589617281693Escherichia coli SE11 chromosome, complete genomephage transcriptional regulator4e-0755.1
NC_011751:643976:651596651596652351756Escherichia coli UMN026 chromosome, complete genomeregulatory protein CI from bacteriophage origin2e-0962.8
NC_011740:2769961:278688227868822787610729Escherichia fergusonii ATCC 35469, complete genomeRegulatory protein CI from bacteriophage origin4e-0755.1
NC_017506:3248724:325658932565893257266678Marinobacter adhaerens HP15 chromosome, complete genomephage repressor7e-1167.4
NC_007794:2304768:232155423215542322195642Novosphingobium aromaticivorans DSM 12444, complete genomeputative phage repressor4e-0652
NC_011770:1431740:144568614456861446441756Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-36153
NC_011770:860944:870555870555871343789Pseudomonas aeruginosa LESB58, complete genometranscriptional regulator1e-46186
NC_015379:4691868:469213346921334692831699Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage regulatory protein3e-1065.9
NC_015379:6023926:603163860316386032267630Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative regulatory protein9e-24110
NC_016830:5994494:600195060019506002681732Pseudomonas fluorescens F113 chromosome, complete genomecro ci family transcriptional regulator7e-26117
NC_004129:4368356:437957643795764380364789Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, Cro/CI family3e-81301
NC_017986:3283433:329590632959063296607702Pseudomonas putida ND6 chromosome, complete genomehypothetical protein7e-1477.8
NC_010501:4379920:438793643879364388715780Pseudomonas putida W619, complete genomeputative phage repressor2e-70265
NC_005773:5310339:531033953103395311070732Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, Cro/CI family8e-27120
NC_015062:99969:103850103850104560711Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencephage repressor5e-0754.7
NC_014034:3111981:311804831180483118797750Rhodobacter capsulatus SB1003 chromosome, complete genomeXRE family transcriptional regulator5e-0961.6
NC_011147:2496808:251241325124132513102690Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional activator-regulatory protein1e-0963.5
NC_006511:2501500:251687725168772517566690Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtranscriptional activator-regulatory protein1e-0963.5
NC_016860:364981:379270379270379959690Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional activator-regulatory protein1e-0963.5
NC_009665:3869904:389559738955973896322726Shewanella baltica OS185 chromosome, complete genomeputative phage repressor3e-35148
NC_009999:38832:459184591846562645Shewanella baltica OS195 plasmid pS19502, complete sequenceputative phage repressor1e-0963.2
NC_007954:3887488:389894838989483899637690Shewanella denitrificans OS217, complete genometransciptional regulator1e-40166
NC_008258:269806:287337287337287969633Shigella flexneri 5 str. 8401, complete genomeputative prophage repressor CI4e-0858.5
NC_007712:1516589:153299615329961533706711Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-31136
NC_007712:1516589:153094915309491531668720Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-33143
NC_007712:3067000:309927530992753099997723Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator8e-34144
NC_004116:1276791:127730112773011277993693Streptococcus agalactiae 2603V/R, complete genomerepressor protein, putative7e-0961.2
NC_016826:929259:942777942777943472696Streptococcus infantarius subsp. infantarius CJ18 chromosome,Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family5e-0754.7