Pre_GI: BLASTP Hits

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Query: NC_004129:2234851:2234851 Pseudomonas fluorescens Pf-5, complete genome

Start: 2234851, End: 2237418, Length: 2568

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:3817330:3833793383379338365432751Pseudomonas syringae pv. tomato str. DC3000, complete genometail tape meausure protein0822
NC_016830:4999946:5018559501855950211382580Pseudomonas fluorescens F113 chromosome, complete genomePhage tail tape measure protein0773
NC_015733:1976752:1976752197675219802403489Pseudomonas putida S16 chromosome, complete genomeputative pyocin R2_PP, tail length determination protein0726
NC_017986:4124335:4124335412433541277243390Pseudomonas putida ND6 chromosome, complete genomeputative pyocin R2 PP, tail length determination protein0722
NC_012724:3070386:3086933308693330891072175Burkholderia glumae BGR1 chromosome 1, complete genomePyocin R2_PP, tail length determination protein, putative5e-141502
NC_008390:2018201:2038128203812820405722445Burkholderia cepacia AMMD chromosome 1, complete sequencepyocin R2_PP, tail length determination protein, putative4e-138493
NC_015381:3457784:3475494347549434774461953Burkholderia gladioli BSR3 chromosome 1, complete sequencePyocin R2_PP, tail length determination protein6e-138492
NC_017033:1089579:1090522109052210928402319Frateuria aurantia DSM 6220 chromosome, complete genomePhage-related minor tail protein1e-128461
NC_011002:564654:5820795820795846192541Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative phage tail protein2e-36155
NC_014307:1765230:1774499177449917770032505Ralstonia solanacearum CFBP2957 chromosome, complete genomephage tail tape measure protein1e-36155
NC_005085:1564087:1571130157113015738562727Chromobacterium violaceum ATCC 12472, complete genomeprobable bacteriophage protein5e-32140
NC_011750:2009889:2027129202712920300802952Escherichia coli IAI39 chromosome, complete genomeputative phage minor tail protein3e-20101
NC_007604:743738:7437387437387465902853Synechococcus elongatus PCC 7942, complete genomePhage tail tape measure protein TP901, core region5e-1790.5
NC_006576:856014:8742818742818771332853Synechococcus elongatus PCC 6301, complete genomeputative bacteriophage protein2e-1688.6
NC_015381:2109500:211234121123412112628288Burkholderia gladioli BSR3 chromosome 1, complete sequencePyocin R2_PP, tail length determination protein7e-1686.7
NC_002927:3827211:3842005384200538442092205Bordetella bronchiseptica RB50, complete genomehypothetical protein4e-1480.9