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Query: NC_004129:2201780:2222187 Pseudomonas fluorescens Pf-5, complete genome

Start: 2222187, End: 2222393, Length: 207

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5031819:503445750344575034663207Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein1e-26118
NC_010508:1206498:121493812149381215144207Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencehypothetical protein1e-0962
NC_009659:3103601:310989731098973110565669Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein6e-0959.7
NC_012724:3100430:310301431030143103220207Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein2e-0858.2