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Query: NC_004129:2201780:2219046 Pseudomonas fluorescens Pf-5, complete genome

Start: 2219046, End: 2219390, Length: 345

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5031819:503743250374325037776345Pseudomonas fluorescens F113 chromosome, complete genomepyocin holin5e-46182
NC_017986:5509569:552934855293485529773426Pseudomonas putida ND6 chromosome, complete genomepyocin R2 PP, holin3e-40163
NC_002947:3404000:342492134249213425268348Pseudomonas putida KT2440, complete genomepyocin R2_PP, holin8e-38155
NC_015733:1943385:195973619597361960110375Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, holin5e-36149
NC_017986:4091051:410775341077534108199447Pseudomonas putida ND6 chromosome, complete genomepyocin R2 PP, holin7e-35145
NC_010322:1336231:135288713528871353234348Pseudomonas putida GB-1 chromosome, complete genomepyocin R2_PP, holin8e-35145