Pre_GI: BLASTP Hits

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Query: NC_004129:2201780:2213809 Pseudomonas fluorescens Pf-5, complete genome

Start: 2213809, End: 2214522, Length: 714

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:3404000:341945034194503420181732Pseudomonas putida KT2440, complete genomepyocin R2_PP, transcriptional repressor, CI/C2 family2e-65248
NC_017986:5509569:552387155238715524602732Pseudomonas putida ND6 chromosome, complete genometranscriptional repressor pyocin R2 PP7e-65246
NC_004578:3849835:385799038579903858721732Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein c29e-61233
NC_013941:3300000:330265133026513303301651Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeP22 repressor protein c22e-22105
NC_013361:3112023:312984531298453130495651Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI2e-22105
NC_012947:3015985:302163430216343022284651Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeXRE family transcriptional regulator2e-22105
NC_009800:289000:301440301440302090651Escherichia coli HS, complete genomeP22 repressor protein c22e-22105
NC_007946:2625461:262998526299852630635651Escherichia coli UTI89, complete genomerepressor protein6e-22104
NC_011083:374000:385883385883386533651Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,P22 repressor protein c25e-22104
NC_013850:1887556:189996518999651900627663Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, XRE family1e-21103
NC_009778:2993218:301640330164033017065663Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-21102
NC_010002:2110953:212346721234672124114648Delftia acidovorans SPH-1, complete genomepeptidase S24 and S26 domain protein2e-2099.4
NC_015663:4767443:478544147854414786193753Enterobacter aerogenes KCTC 2190 chromosome, complete genomeP22 repressor protein c25e-1994.7
NC_009783:1956000:195674419567441957409666Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein2e-1892.4
AC_000091:1191353:120383612038361204510675Escherichia coli W3110 DNA, complete genomerepressor protein phage e147e-1890.9
NC_007946:2931364:293500329350032935677675Escherichia coli UTI89, complete genomeputative phage repressor7e-1890.9
NC_008563:2946391:295003029500302950704675Escherichia coli APEC O1, complete genomeputative phage repressor7e-1890.9
NC_000913:1188999:120148212014821202156675Escherichia coli K12, complete genomee14 prophage; repressor protein phage e147e-1890.9
NC_011742:2863316:286734128673412868015675Escherichia coli S88 chromosome, complete genomerepressor protein phage e14; e14 prophage7e-1890.9
NC_011750:5045927:505908250590825059756675Escherichia coli IAI39 chromosome, complete genomerepressor protein phage e14; e14 prophage1e-1790.1
NC_015379:4691868:469213346921334692831699Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage regulatory protein1e-1790.1
NC_011415:2153243:216098621609862161642657Escherichia coli SE11 chromosome, complete genomeputative phage repressor9e-1684
NC_012660:3116500:312771631277163128423708Pseudomonas fluorescens SBW25 chromosome, complete genomee14 prophage; putative phage repressor1e-1583.2
NC_010554:2646806:265134526513452651992648Proteus mirabilis HI4320, complete genomephage repressor6e-1581.3
NC_017047:1906000:190737719073771908024648Rahnella aquatilis HX2 chromosome, complete genomeputative repressor protein of prophage3e-1479
NC_017328:303987:317642317642318337696Shigella flexneri 2002017 chromosome, complete genomeCI protein3e-1479
NC_012731:2083650:209731020973102098035726Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative repressor protein of prophage2e-1479
NC_013364:2645438:265235726523572652980624Escherichia coli O111:H- str. 11128, complete genomeputative phage repressor protein CI3e-1478.6
NC_004431:3040953:305923330592333059859627Escherichia coli CFT073, complete genomePutative repressor protein of prophage4e-1478.2
NC_016809:1778000:177820117782011778866666Haemophilus influenzae 10810, complete genomehypothetical protein9e-1477.4
NC_008563:1175035:118767011876701188365696Escherichia coli APEC O1, complete genomeputative CI repressor of bacteriophage9e-1477
NC_011742:1177946:119125811912581191959702Escherichia coli S88 chromosome, complete genomeRepressor protein CI from phage origin9e-1477
NC_007946:1239278:125028212502821250935654Escherichia coli UTI89, complete genomeputative CI repressor of bacteriophage9e-1477
NC_011601:1039500:105177110517711052424654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein9e-1477
NC_013941:975353:989229989229989882654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI protein9e-1477
NC_017986:4091051:410215841021584102514357Pseudomonas putida ND6 chromosome, complete genomerepressor protein CI1e-1273.6
NC_009708:2537557:255467625546762555386711Yersinia pseudotuberculosis IP 31758 chromosome, complete genomerepressor protein C21e-1273.6
NC_020418:2910593:291496229149622915621660Morganella morganii subsp. morganii KT, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidases)2e-1272.8
NC_012759:4132527:414282841428284143541714Escherichia coli BW2952 chromosome, complete genomeRepressor protein CI2e-1272.4
NC_011601:2614691:261961826196182620331714Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein2e-1272.4
NC_015968:3301958:331235333123533313006654Enterobacter asburiae LF7a chromosome, complete genomephage repressor like XRE family transcriptional regulator2e-1272.4
NC_002695:301939:301939301939302652714Escherichia coli O157:H7 str. Sakai, complete genomecI3e-1272
NC_002655:301940:301940301940302653714Escherichia coli O157:H7 EDL933, complete genomeputative cI repressor protein for prophage CP-933H3e-1272
NC_011353:305820:305820305820306533714Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprophage repressor3e-1272
NC_008258:269806:287337287337287969633Shigella flexneri 5 str. 8401, complete genomeputative prophage repressor CI4e-1271.6
NC_004431:1401681:141242714124271412849423Escherichia coli CFT073, complete genomeRepressor protein5e-1271.2
NC_014306:3524980:356790335679033568601699Erwinia billingiae Eb661, complete genomeRepressor protein cI6e-1271.2
NC_014837:2354241:235780423578042358529726Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator2e-1169.7
NC_007645:605500:605820605820606407588Hahella chejuensis KCTC 2396, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidase)2e-1169.7
NC_020418:3133831:313802131380213138731711Morganella morganii subsp. morganii KT, complete genomerepressor protein CI8e-1167.4
NC_012779:2184927:220196422019642202635672Edwardsiella ictaluri 93-146, complete genomerepressor protein CI3e-1065.5
NC_007712:2028500:206857220685722069294723Sodalis glossinidius str. 'morsitans', complete genomephage repressor4e-0962
NC_012791:2832001:285731328573132857981669Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family3e-0962
NC_011283:4212000:422109942210994221815717Klebsiella pneumoniae 342 chromosome, complete genomephage repressor protein4e-0961.6
NC_009348:1663870:166905016690501669733684Aeromonas salmonicida subsp. salmonicida A449, complete genomephage repressor6e-0961.2
NC_002655:1332961:134290313429031343610708Escherichia coli O157:H7 EDL933, complete genomeputative repressor protein CI of bacteriophage BP-933W8e-0960.8
AP010958:5361207:537689453768945377601708Escherichia coli O103:H2 str. 12009 DNA, complete genomephage repressor protein CI8e-0960.8
NC_011353:3276734:328183732818373282544708Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerepressor protein CI8e-0960.8
NC_013008:3231414:323670832367083237415708Escherichia coli O157:H7 str. TW14359 chromosome, complete genomerepressor protein CI8e-0960.8
NC_013353:5361207:537689453768945377601708Escherichia coli O103:H2 str. 12009, complete genomephage repressor protein CI8e-0960.8
NC_013364:1183000:119416011941601194867708Escherichia coli O111:H- str. 11128, complete genomeputative repressor protein8e-0960.8
NC_011751:1405381:141919414191941419901708Escherichia coli UMN026 chromosome, complete genomerepressor protein of bacteriophage origin8e-0960.8
NC_011601:717072:730647730647731354708Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein8e-0960.8
NC_011740:2072173:211007221100722110779708Escherichia fergusonii ATCC 35469, complete genomerepressor protein of bacteriophage origin9e-0960.5
NC_010067:2529750:258744925874492588159711Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0860.1
NC_009800:320115:326165326165326806642Escherichia coli HS, complete genomehelix-turn-helix/peptidase S24-like domain protein2e-0859.3
NC_006138:2288261:230836023083602309070711Desulfotalea psychrophila LSv54, complete genomesimilar to repressor protein1e-0757
NC_016809:389561:394152394152394811660Haemophilus influenzae 10810, complete genomehypothetical protein9e-0753.9
NC_004578:4499143:452278245227824523486705Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein cI8e-0650.8