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Query: NC_004088:3689000:3717640 Yersinia pestis KIM, complete genome

Start: 3717640, End: 3718290, Length: 651

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017265:809943:819059819059819709651Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein6e-120429
NC_008149:3556999:358551735855173586167651Yersinia pestis Nepal516, complete genomemembrane protein6e-120429
NC_010465:893921:903021903021903671651Yersinia pseudotuberculosis YPIII, complete genomeAbortive infection protein6e-120429
NC_003143:1059580:108953310895331090183651Yersinia pestis CO92, complete genomehypothetical protein6e-120429
NC_006155:3805640:383562238356223836272651Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein6e-120429
NC_010634:3720214:374869437486943749344651Yersinia pseudotuberculosis PB1/+, complete genomeabortive infection protein6e-120429
NC_008150:317903:327958327958328608651Yersinia pestis Antiqua, complete genomehypothetical protein6e-120429
NC_005810:3917254:392905539290553929705651Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-120429
NC_009708:874770:883884883884884534651Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeCAAX amino terminal protease family protein6e-120429
NC_017168:3286:150911509115741651Yersinia pestis A1122 chromosome, complete genomehypothetical protein6e-120429
NC_010159:172469:191226191226191648423Yersinia pestis Angola, complete genomeCAAX amino terminal protease family protein3e-73274
NC_014029:961522:970871970871971293423Yersinia pestis Z176003 chromosome, complete genomeCAAX amino terminal protease family protein3e-73274
NC_017154:902739:913023913023913445423Yersinia pestis D106004 chromosome, complete genomeCAAX amino terminal protease family protein3e-73274
NC_017160:905783:915132915132915554423Yersinia pestis D182038 chromosome, complete genomeCAAX amino terminal protease family protein3e-73274
NC_012880:2871480:289277428927742893427654Dickeya dadantii Ech703, complete genomeAbortive infection protein4e-56217
NC_009381:588137:597610597610597891282Yersinia pestis Pestoides F chromosome, complete genomemembrane protein1e-45182
NC_013592:2703327:271653127165312717184654Dickeya dadantii Ech586, complete genomeAbortive infection protein4e-1581.6
NC_008253:296500:306641306641307327687Escherichia coli 536, complete genomehypothetical protein7e-1167.4
NC_004431:1166568:118357211835721184258687Escherichia coli CFT073, complete genomehypothetical protein1e-1067
NC_004431:279868:297875297875298303429Escherichia coli CFT073, complete genomehypothetical protein6e-1064.3
NC_011749:34056:494324943250085654Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehypothetical protein8e-1063.9
NC_019960:1198067:122115712211571221969813Prevotella dentalis DSM 3688 chromosome 1, complete sequenceputative protease of the Abi (CAAX) family6e-0651.2
NC_016048:2563222:257503125750312575963933Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein6e-0650.8
NC_009437:166179:171733171733172455723Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeabortive infection protein8e-0650.4