Pre_GI: BLASTP Hits

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Query: NC_004088:3689000:3689173 Yersinia pestis KIM, complete genome

Start: 3689173, End: 3691335, Length: 2163

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010163:1361217:1374513137451313759881476Acholeplasma laidlawii PG-8A chromosome, complete genomelysine decarboxylase1e-1172
NC_008752:3595516:3600450360045036028312382Acidovorax avenae subsp. citrulli AAC00-1, complete genomeLysine decarboxylase9e-84311
NC_015424:4251369:4260525426052542627622238Aeromonas veronii B565 chromosome, complete genomeOrnithine decarboxylase, inducible01070
NC_011989:2795811:2795811279581127981682358Agrobacterium vitis S4 chromosome 1, complete sequenceornithine decarboxylase3e-160566
NC_020453:3103549:3122535312253531248922358Agromonas oligotrophica S58 DNA, complete genomeornithine decarboxylase5e-157555
NC_014910:2779573:2779573277957327819332361Alicycliphilus denitrificans BC chromosome, complete genomelysine decarboxylase6e-85315
NC_011567:1:3468934689361131425Anoxybacillus flavithermus WK1, complete genomeArginine/lysine/ornithine decarboxylase7e-1066.2
NC_014976:2231984:2253476225347622549181443Bacillus subtilis BSn5 chromosome, complete genomeputative lysine decarboxylase2e-1068.6
NC_014171:1:3483334833362541422Bacillus thuringiensis BMB171 chromosome, complete genomearginine decarboxylase7e-0859.7
NC_017208:1:3438634386358071422Bacillus thuringiensis serovar chinensis CT-43 chromosome, completearginine decarboxylase5e-0860.5
NC_014652:757381:7680177680177694981482Caldicellulosiruptor hydrothermalis 108 chromosome, completeorn/lys/arg decarboxylase major region3e-1274.3
NC_014392:1935130:1957506195750619590381533Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeOrn/Lys/Arg decarboxylase major region4e-1273.9
NC_016012:879972:8977828977828992391458Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeOrn/Lys/Arg decarboxylase major region5e-1480.1
NC_010424:14657:4182241822433091488Candidatus Desulforudis audaxviator MP104C, complete genomeOrn/Lys/Arg decarboxylase, major region2e-1068.6
NC_010995:4338860:4357272435727243595242253Cellvibrio japonicus Ueda107, complete genomeprobable orn/arg/lys decarboxylase4e-89329
NC_009792:4017510:4020136402013640222712136Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein01050
NC_013716:5201097:5273026527302652751612136Citrobacter rodentium ICC168, complete genomeornithine decarboxylase, constitutive01051
NC_003030:303812:3528673528673543121446Clostridium acetobutylicum ATCC 824, complete genomeLysine decarboxylase1e-1585.9
NC_015687:303810:3528633528633543081446Clostridium acetobutylicum DSM 1731 chromosome, complete genomelysine decarboxylase1e-1585.9
NC_009495:3309550:3313006331300633144661461Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeOrn/Lys/Arg decarboxylase3e-1274.3
NC_009698:3185359:3186102318610231875621461Clostridium botulinum A str. Hall chromosome, complete genomeOrn/Lys/Arg decarboxylase3e-1274.3
NC_010674:3049500:3069278306927830706931416Clostridium botulinum B str. Eklund 17B, complete genomearginine/lysine decarboxylase2e-0965.1
NC_010516:3368951:3373629337362933750891461Clostridium botulinum B1 str. Okra, complete genomeOrn/Lys/Arg decarboxylase3e-1274.7
NC_012658:3387774:3391191339119133926511461Clostridium botulinum Ba4 str. 657 chromosome, complete genomeOrn/Lys/Arg decarboxylase2e-1274.7
NC_010723:2873886:2892952289295228943761425Clostridium botulinum E3 str. Alaska E43, complete genomearginine/lysine decarboxylase2e-1068.6
NC_009706:3845039:3845039384503938464781440Clostridium kluyveri DSM 555 chromosome, complete genomeprotein SpeA21e-1069.3
NC_011837:3776541:3776541377654137779801440Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-1069.3
NC_014328:85290:1403051403051417531449Clostridium ljungdahlii ATCC 49587 chromosome, complete genomearginine decarboxylase7e-1376.3
NC_003366:2788268:2799143279914328005731431Clostridium perfringens str. 13, complete genomeprobable lysine decarboxylase4e-0963.9
NC_014376:6296:2508925089265641476Clostridium saccharolyticum WM1 chromosome, complete genomeOrn/Lys/Arg decarboxylase major region2e-1378.6
NC_020291:1810527:1810527181052718119571431Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomearginine/lysine/ornithine decarboxylase2e-1274.7
NC_020134:1941523:1960996196099619624381443Clostridium stercorarium subsp. stercorarium DSM 8532, completearginine decarboxylase SpeA2e-1068.2
NC_020260:263528:2840052840052861432139Cronobacter sakazakii Sp291, complete genomeornithine decarboxylase01035
NC_013282:3719500:3719533371953337216712139Cronobacter turicensis, complete genomeOrnithine decarboxylase, constitutive01033
NC_019903:134169:1479881479881494391452Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,arginine/lysine/ornithine decarboxylase9e-0756.2
NC_016584:85543:1185231185231199741452Desulfosporosinus orientis DSM 765 chromosome, complete genomearginine/lysine/ornithine decarboxylase1e-1275.5
NC_014500:1066911:1089233108923310913862154Dickeya dadantii 3937 chromosome, complete genomeornithine decarboxylase, constitutive01047
NC_013592:956829:9792839792839814362154Dickeya dadantii Ech586, complete genomeOrnithine decarboxylase01048
NC_012880:3529017:3529017352901735311702154Dickeya dadantii Ech703, complete genomeOrnithine decarboxylase01044
NC_012779:305969:3154533154533177232271Edwardsiella ictaluri 93-146, complete genomeOrn/Lys/Arg decarboxylase family, putative7e-94345
NC_013508:275081:2890652890652900841020Edwardsiella tarda EIB202, complete genomeornithine decarboxylase isozyme1e-126454
NC_013508:275081:2900602900602912261167Edwardsiella tarda EIB202, complete genomeornithine decarboxylase7e-171601
NC_020063:2785652:2793233279323327953772145Enterobacteriaceae bacterium strain FGI 57, complete genomearginine/lysine/ornithine decarboxylase8e-84311
NC_004547:1062410:1076168107616810783212154Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeornithine decarboxylase, constitutive01029
NC_008253:334467:3463563463563484822127Escherichia coli 536, complete genomelysine decarboxylase8e-86318
NC_008253:3122148:3124737312473731268722136Escherichia coli 536, complete genomeornithine decarboxylase, constitutive01059
NC_008563:4739333:4759622475962247619912370Escherichia coli APEC O1, complete genomehypothetical protein2e-85317
NC_010468:4252940:4275850427585042779972148Escherichia coli ATCC 8739, complete genomeLysine decarboxylase2e-82307
NC_004431:4270305:4285772428577242881412370Escherichia coli CFT073, complete genomehypothetical protein2e-85317
CP002797:4411763:4432684443268444348312148Escherichia coli NA114, complete genomeLysine decarboxylase2e-82307
NC_013364:3701895:3701895370189537040302136Escherichia coli O111:H- str. 11128, complete genomeornithine decarboxylase SpeC, constitutive01055
NC_013361:5319497:5322767532276753249142148Escherichia coli O26:H11 str. 11368 chromosome, complete genomelysine decarboxylase 12e-82307
NC_011742:4655373:4674284467428446766532370Escherichia coli S88 chromosome, complete genomeOrn/Lys/Arg decarboxylase2e-85317
NC_012778:2997:2242522425238281404Eubacterium eligens ATCC 27750, complete genomelysine decarboxylase2e-0758.5
NC_010556:26567:4078740787421961410Exiguobacterium sibiricum 255-15, complete genomeArginine decarboxylase9e-0962.8
NC_016631:2112175:2164634216463421670782445Granulicella mallensis MP5ACTX8 chromosome, complete genomelysine decarboxylase9e-86318
NC_016845:4498097:4499394449939445015322139Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,ornithine decarboxylase01042
NC_008054:1502210:1508502150850215106072106Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeOrnithine decarboxylase4e-154545
NC_008529:1514000:1519643151964315217482106Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeArginine/lysine/ornithine decarboxylase1e-154547
NC_005362:1954443:1972219197221919743182100Lactobacillus johnsonii NCC 533, complete genomeornithine decarboxylase3e-152539
NC_012559:978419:99867899867810009332256Laribacter hongkongensis HLHK9, complete genomeAdi2e-88327
NC_012488:2719955:2740207274020727415861380Listeria monocytogenes Clip81459, complete genomelysine decarboxylase8e-0859.7
NC_003210:2749538:2770060277006027714391380Listeria monocytogenes EGD-e, complete genomehypothetical protein5e-0963.5
NC_002973:2701983:2722235272223527236141380Listeria monocytogenes str. 4b F2365, complete genomeOrn/Lys/Arg decarboxylase1e-0759.3
NC_009051:1242351:1251338125133812536412304Methanoculleus marisnigri JR1, complete genomeLysine decarboxylase2e-102374
NC_008825:2063990:2064818206481820670792262Methylibium petroleiphilum PM1, complete genomeLysine decarboxylase1e-81304
NC_004193:35698:3746537465388831419Oceanobacillus iheyensis HTE831, complete genomelysine decarboxylase2e-0965.1
NC_014483:3235968:3235968323596832374431476Paenibacillus polymyxa E681 chromosome, complete genomeArginine decarboxylase4e-1894
NC_014622:3525017:3526491352649135279661476Paenibacillus polymyxa SC2 chromosome, complete genomeorn/lys/arg decarboxylase major region9e-1995.9
NC_013406:2207520:2227312222731222287991488Paenibacillus sp. Y412MC10 chromosome, complete genomeOrn/Lys/Arg decarboxylase major region3e-20100
NC_013421:3752619:3752619375261937547722154Pectobacterium wasabiae WPP163, complete genomeOrnithine decarboxylase01027
NC_015733:2194676:2204114220411422061622049Pseudomonas putida S16 chromosome, complete genomeornithine decarboxylase, constitutive2e-131470
NC_016818:3851542:3870201387020138723632163Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completearginine/lysine/ornithine decarboxylase01144
NC_017047:3907854:3925868392586839280302163Rahnella aquatilis HX2 chromosome, complete genomeornithine decarboxylase01148
NC_015061:3840463:3858477385847738606392163Rahnella sp. Y9602 chromosome, complete genomeOrnithine decarboxylase01148
NC_014311:1106871:1110772111077211130512280Ralstonia solanacearum PSI07 chromosome, complete genomelysine decarboxylase (LDC)2e-89330
NC_021066:4906239:4923478492347849256342157Raoultella ornithinolytica B6, complete genomeornithine decarboxylase01048
NC_011004:2507566:2525654252565425280112358Rhodopseudomonas palustris TIE-1, complete genomeOrnithine decarboxylase6e-157555
NC_010067:4418000:4439355443935544414902136Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein01044
NC_010067:3247169:3265385326538532676552271Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-88328
NC_011149:2040396:2051599205159920529811383Salmonella enterica subsp. enterica serovar Agona str. SL483,lysine decarboxylase6e-1170.1
NC_011149:3187022:3189642318964231917772136Salmonella enterica subsp. enterica serovar Agona str. SL483,ornithine decarboxylase, constitutive01039
NC_011147:3075186:3077806307780630799322127Salmonella enterica subsp. enterica serovar Paratyphi A strornithine decarboxylase01036
NC_006511:3079512:3082132308213230842582127Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCornithine decarboxylase isozyme01036
NC_011094:2061000:2073287207328720746691383Salmonella enterica subsp. enterica serovar Schwarzengrund strlysine decarboxylase7e-1169.7
NC_003198:3126548:3129168312916831312922125Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-152540
NC_020064:3998715:3998715399871540008772163Serratia marcescens FGI94, complete genomearginine/lysine/ornithine decarboxylase01153
NC_020211:4484817:4487375448737544895432169Serratia marcescens WW4, complete genomeornithine decarboxylase01160
NC_009832:4482500:4483726448372644858882163Serratia proteamaculans 568, complete genomeOrnithine decarboxylase01183
NC_015566:4547702:4549336454933645514982163Serratia sp. AS12 chromosome, complete genomeOrnithine decarboxylase01154
NC_017328:3088907:3088907308890730911022196Shigella flexneri 2002017 chromosome, complete genomeOrnithine decarboxylase isozyme01049
NC_004741:3041294:3041294304129430434892196Shigella flexneri 2a str. 2457T, complete genomeornithine decarboxylase isozyme01049
NC_004337:3049118:3049118304911830513132196Shigella flexneri 2a str. 301, complete genomeornithine decarboxylase isozyme01049
NC_006177:3457637:3477988347798834793971410Symbiobacterium thermophilum IAM 14863, complete genomearginine/lysine/ornithine decarboxylase7e-2099.8
NC_007775:1002934:1015046101504610165811536Synechococcus sp. JA-3-3Ab, complete genomeOrn/Lys/Arg decarboxylase5e-1996.7
NC_008346:36176:5056250562520641503Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeOrn/Lys/Arg decarboxylase, major region2e-1068.6
NC_014964:2199252:2199252219925222006731422Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeOrn/Lys/Arg decarboxylase major region1e-1999.4
NC_010321:2207364:2212107221210722135281422Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeOrn/Lys/Arg decarboxylase, major region1e-1999.4
NC_003869:74836:9599295992974221431Thermoanaerobacter tengcongensis MB4, complete genomeArginine/lysine/ornithine decarboxylase3e-1687.8
NC_014410:51711:8720187201886221422Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Orn/Lys/Arg decarboxylase major region2e-22108
NC_019970:35985:7365373653750741422Thermoanaerobacterium thermosaccharolyticum M0795, complete genomearginine/lysine/ornithine decarboxylase2e-21104
NC_015555:49842:8697586975883961422Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeArginine decarboxylase1e-22108
NC_008786:3845988:3869870386987038721882319Verminephrobacter eiseniae EF01-2, complete genomeLysine decarboxylase2e-81304
NC_016614:1543333:1560108156010815624022295Vibrio sp. EJY3 chromosome 2, complete sequenceresponse regulator receiver domain-containing protein3e-91337
NC_016614:1543333:1557721155772115600152295Vibrio sp. EJY3 chromosome 2, complete sequencearginine decarboxylase2e-93343
NC_004459:2025436:2052055205205520541632109Vibrio vulnificus CMCP6 chromosome I, complete sequenceLysine decarboxylase4e-86319
NC_014966:1668822:1680989168098916823861398Vibrio vulnificus MO6-24/O chromosome II, complete sequencelysine decarboxylase5e-0757
NC_003143:1059580:1061095106109510632572163Yersinia pestis CO92, complete genomeornithine decarboxylase01432
NC_008149:3556999:3556999355699935593262328Yersinia pestis Nepal516, complete genomeornithine decarboxylase01433
NC_006155:3805640:3807164380716438093262163Yersinia pseudotuberculosis IP 32953, complete genomeOrnithine decarboxylase01431
NC_010634:3720214:3720214372021437223762163Yersinia pseudotuberculosis PB1/+, complete genomeOrn/Lys/Arg decarboxylase major region01429