Pre_GI: BLASTP Hits

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Query: NC_004088:3661601:3678521 Yersinia pestis KIM, complete genome

Start: 3678521, End: 3679768, Length: 1248

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005810:3964468:3967577396757739688241248Yersinia pestis biovar Microtus str. 91001, complete genomeadenine DNA glycosylase0847
NC_010465:933488:9366159366159378741260Yersinia pseudotuberculosis YPIII, complete genomeA/G-specific adenine glycosylase0840
NC_010634:3692321:3709311370931137105701260Yersinia pseudotuberculosis PB1/+, complete genomeA/G-specific adenine glycosylase0839
NC_010159:138879:1572481572481583661119Yersinia pestis Angola, complete genomeA/G-specific adenine glycosylase0772
NC_008149:3529428:3546476354647635475941119Yersinia pestis Nepal516, complete genomeA/G-specific adenine glycosylase0772
NC_008150:361224:3664523664523675701119Yersinia pestis Antiqua, complete genomeA/G-specific adenine glycosylase0772
NC_009381:627685:6307936307936319111119Yersinia pestis Pestoides F chromosome, complete genomeadenine DNA glycosylase0772
NC_014029:1001000:1004166100416610052841119Yersinia pestis Z176003 chromosome, complete genomeA/G-specific adenine glycosylase0772
NC_017154:941065:9463119463119474291119Yersinia pestis D106004 chromosome, complete genomeA/G-specific adenine glycosylase0772
NC_017160:945176:9482849482849494021119Yersinia pestis D182038 chromosome, complete genomeA/G-specific adenine glycosylase0772
NC_017168:50391:5358453584547021119Yersinia pestis A1122 chromosome, complete genomeadenine DNA glycosylase0772
NC_003143:1033500:1050575105057510516901116Yersinia pestis CO92, complete genomeA/G-specific adenine glycosylase0770
NC_017265:854492:8576018576018587161116Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,adenine DNA glycosylase0770
NC_006155:3779381:3796473379647337975881116Yersinia pseudotuberculosis IP 32953, complete genomeA/G-specific adenine glycosylase.0766
NC_009708:986918:9901519901519912661116Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeadenine DNA glycosylase0766
NC_020211:4484817:4484817448481744859171101Serratia marcescens WW4, complete genomeadenine DNA glycosylase5e-171600
NC_014500:1066911:1097756109775610988471092Dickeya dadantii 3937 chromosome, complete genomeadenine DNA glycosylase2e-164578
NC_015061:3840463:3842851384285138439271077Rahnella sp. Y9602 chromosome, complete genomeA/G-specific adenine glycosylase1e-163576
NC_017047:3907854:3910242391024239113181077Rahnella aquatilis HX2 chromosome, complete genomeadenine DNA glycosylase1e-163576
NC_016818:3851542:3854574385457438556501077Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeA/G-specific adenine glycosylase4e-163574
NC_013592:956829:9855119855119866441134Dickeya dadantii Ech586, complete genomeA/G-specific adenine glycosylase3e-160565
NC_013508:275081:2946172946172957051089Edwardsiella tarda EIB202, complete genomeA/G-specific adenine glycosylase1e-158559
NC_012779:261438:2776432776432787311089Edwardsiella ictaluri 93-146, complete genomeA/G-specific adenine glycosylase, putative2e-156552
NC_020418:1397112:1419744141974414207811038Morganella morganii subsp. morganii KT, complete genomeA/G-specific adenine glycosylase3e-145514
NC_009053:1942973:1974422197442219755671146Actinobacillus pleuropneumoniae L20, complete genomeA/G-specific adenine glycosylase2e-118426
NC_010278:1918000:1936009193600919371541146Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,A/G-specific adenine glycosylase2e-118426
NC_010939:1986263:1999305199930520004501146Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeA/G-specific adenine glycosylase1e-116419
NC_018868:2935580:2934525293452529355831059Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeA / G specific adenine glycosylase2e-106386
NC_009439:4661102:4663324466332446643911068Pseudomonas mendocina ymp, complete genomeA/G-specific DNA-adenine glycosylase4e-100365
NC_015572:427732:4311994311994322661068Methylomonas methanica MC09 chromosome, complete genomeA/G-specific adenine glycosylase9e-98357
NC_020829:5174354:5178799517879951798661068Pseudomonas denitrificans ATCC 13867, complete genomeA/G-specific adenine glycosylase3e-95349
NC_011901:3072817:3087767308776730888131047Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeA/G-specific DNA-adenine glycosylase1e-94347
NC_013166:194614:2128162128162138831068Kangiella koreensis DSM 16069, complete genomeA/G-specific adenine glycosylase2e-92340
NC_007645:1336227:1353732135373213548981167Hahella chejuensis KCTC 2396, complete genomeA/G-specific adenine glycosylase2e-88326
NC_013889:2603914:2607419260741926084741056Thioalkalivibrio sp. K90mix chromosome, complete genomeA/G-specific adenine glycosylase4e-87322
NC_019940:2236630:2254717225471722558321116Thioflavicoccus mobilis 8321 chromosome, complete genomeA/G-specific adenine glycosylase8e-85314
NC_020541:3156500:3158753315875331598141062Rhodanobacter sp. 2APBS1, complete genomeA/G-specific DNA-adenine glycosylase5e-83308
NC_004556:1076063:1093959109395910950081050Xylella fastidiosa Temecula1, complete genomeA/G-specific adenine glycosylase2e-76286
NC_010577:1087092:1103846110384611048951050Xylella fastidiosa M23, complete genomeA/G-specific adenine glycosylase2e-76286
NC_015731:990000:9956459956459967301086Nitrosomonas sp. Is79A3 chromosome, complete genomeA/G-specific adenine glycosylase2e-75283
NC_012559:2663747:2663747266374726647841038Laribacter hongkongensis HLHK9, complete genomeMutY6e-75281
NC_008789:1237969:1240978124097812420541077Halorhodospira halophila SL1, complete genomeA/G-specific adenine glycosylase2e-74279
NC_015677:3520524:3537720353772035387301011Ramlibacter tataouinensis TTB310 chromosome, complete genomeA/G-specific adenine glycosylase protein1e-73277
NC_010513:1128000:1143343114334311443921050Xylella fastidiosa M12 chromosome, complete genomeA/G-specific adenine glycosylase2e-72273
NC_003116:1518110:1520242152024215212911050Neisseria meningitidis Z2491, complete genomeadenine glycosylase2e-72273
NC_002488:1812696:1814457181445718155301074Xylella fastidiosa 9a5c, complete genomeA/G-specific adenine glycosylase3e-72272
NC_017512:1294970:1296216129621612972561041Neisseria meningitidis WUE 2594, complete genomeA/G-specific adenine glycosylase5e-72271
NC_017501:980848:9971129971129981521041Neisseria meningitidis 8013, complete genomeA/G-specific adenine glycosylase7e-72271
NC_017516:879834:9049449049449059931050Neisseria meningitidis H44/76 chromosome, complete genomeA/G-specific adenine glycosylase9e-72271
NC_003112:1423528:1425619142561914266681050Neisseria meningitidis MC58, complete genomeA/G-specific adenine glycosylase9e-72271
NC_010120:1313500:1314747131474713157961050Neisseria meningitidis 053442, complete genomeA/G-specific adenine glycosylase3e-71269
NC_008767:1321129:1323283132328313243321050Neisseria meningitidis FAM18, complete genomeadenine glycosylase3e-71269
NC_017505:1370128:1372226137222613732661041Neisseria meningitidis alpha710 chromosome, complete genomeadenine glycosylase2e-71269
NC_017514:863485:8823588823588833981041Neisseria meningitidis M01-240149 chromosome, complete genomeA/G-specific adenine glycosylase2e-71269
NC_017518:1449923:1452021145202114530611041Neisseria meningitidis NZ-05/33 chromosome, complete genomeA/G-specific adenine glycosylase2e-71269
NC_017515:875500:8939208939208949601041Neisseria meningitidis M04-240196 chromosome, complete genomeA/G-specific adenine glycosylase6e-71268
NC_017513:1331623:1333723133372313347631041Neisseria meningitidis G2136 chromosome, complete genomeA/G-specific adenine glycosylase6e-71268
NC_013016:1289975:1292073129207312931131041Neisseria meningitidis alpha14 chromosome, complete genomeA/G-specific adenine glycosylase2e-70266
NC_017517:1409000:1410430141043014114701041Neisseria meningitidis M01-240355 chromosome, complete genomeA/G-specific adenine glycosylase4e-70265
NC_014109:27500:3219432194332971104Candidatus Riesia pediculicola USDA chromosome, complete genomeA/G-specific adenine glycosylase1e-68260
NC_018704:645843:6495766495766506401065Amphibacillus xylanus NBRC 15112, complete genomeA/G-specific adenine glycosylase9e-57221
NC_014624:171394:1844351844351855231089Eubacterium limosum KIST612 chromosome, complete genomeA/G-specific adenine glycosylase3e-54213
NC_011026:2624775:2631907263190726329891083Chloroherpeton thalassium ATCC 35110, complete genomeA/G-specific adenine glycosylase8e-54211
NC_016510:4343:91069106101371032Flavobacterium columnare ATCC 49512 chromosome, complete genomeA/G-specific adenine glycosylase5e-53208
NC_009482:87193:1009261009261020861161Synechococcus sp. RCC307 chromosome, complete genomeA/G-specific DNA glycosylase5e-53208
NC_015977:2565922:2586238258623825874041167Roseburia hominis A2-183 chromosome, complete genomeA/G-specific DNA glycosylase7e-53208
NC_016938:336000:3552363552363564111176Melissococcus plutonius DAT561 chromosome 1, complete genomeA/G-specific adenine glycosylase1e-52207
NC_010556:691498:6914986914986925141017Exiguobacterium sibiricum 255-15, complete genomeA/G-specific adenine glycosylase4e-51202
NC_014033:2410331:2412864241286424138801017Prevotella ruminicola 23 chromosome, complete genomeA/G-specific adenine glycosylase4e-48192
NC_014958:557208:5620945620945631101017Deinococcus maricopensis DSM 21211 chromosome, complete genomeA/G-specific adenine glycosylase4e-47189
NC_009675:2177500:2178493217849321795931101Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeA/G-specific adenine glycosylase2e-46187
NC_012121:1444633:1467783146778314688411059Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative A/G-specific adenine glycosylase2e-46187
NC_008686:2080770:210031021003102101296987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceHhH-GPD family protein3e-46186
NC_019907:1411124:1430287143028714313631077Liberibacter crescens BT-1 chromosome, complete genomeA/G-specific adenine glycosylase2e-45183
NC_013946:2854219:287080528708052871797993Meiothermus ruber DSM 1279 chromosome, complete genomeA/G-specific adenine glycosylase4e-44179
NC_013162:1130554:1148572114857211496241053Capnocytophaga ochracea DSM 7271, complete genomeA/G-specific adenine glycosylase2e-43176
NC_011145:2190531:2192469219246921936681200Anaeromyxobacter sp. K, complete genomeA/G-specific adenine glycosylase4e-43176
NC_011891:2264853:2266786226678622679911206Anaeromyxobacter dehalogenans 2CP-1, complete genomeA/G-specific adenine glycosylase3e-42172
NC_007760:2175992:2190747219074721919581212Anaeromyxobacter dehalogenans 2CP-C, complete genomeA/G-specific adenine glycosylase9e-40164
NC_014160:801618:836046836046836699654Thermosphaera aggregans DSM 11486 chromosome, complete genomeHhH-GPD family protein3e-34146
NC_012522:4692260:470602047060204706925906Rhodococcus opacus B4, complete genomeputative adenine glycosylase2e-30133
NC_008268:4669530:468655846865584687538981Rhodococcus sp. RHA1, complete genomeprobable A/G-specific adenine DNA glycosylase7e-30132
NC_000854:564811:573589573589574260672Aeropyrum pernix K1, complete genomeU/G and T/G mismatch-specific DNA glycosylase7e-29128
NC_020302:2677617:267830526783052679186882Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein7e-29128
NC_019673:359540:380408380408381277870Saccharothrix espanaensis DSM 44229 complete genomeHhH-GPD family protein6e-29128
NC_015953:3159234:316034331603433161245903Streptomyces sp. SirexAA-E chromosome, complete genomeHhH-GPD family protein4e-28125
NC_011831:1693935:170314817031481703819672Chloroflexus aggregans DSM 9485, complete genomeHhH-GPD family protein3e-27123
NC_008536:2079052:211504121150412115700660Solibacter usitatus Ellin6076, complete genomehelix-hairpin-helix motif3e-27123
NC_009464:650997:658871658871659509639Uncultured methanogenic archaeon RC-I, complete genomeputative DNA glycosylase2e-26120
NC_015514:3911655:393411339341133935021909Cellulomonas fimi ATCC 484 chromosome, complete genomeHhH-GPD family protein5e-25115
NC_014721:2135500:218887421888742189566693Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehelix-hairpin-helix motif protein5e-24112
NC_013967:2641433:266923426692342669872639Haloferax volcanii DS2 chromosome, complete genomeA/G-specific adenine glycosylase1e-23111
NC_014761:74500:808058080581455651Oceanithermus profundus DSM 14977 chromosome, complete genomehhh-gpd family protein4e-23109
NC_011832:2306341:230634123063412307234894Candidatus Methanosphaerula palustris E1-9c, complete genomeHhH-GPD family protein4e-22106
NC_019964:3028469:305166130516613052290630Halovivax ruber XH-70, complete genomeA/G-specific DNA glycosylase4e-21102
NC_003901:357394:372163372163372837675Methanosarcina mazei Go1, complete genomeT/G-specific DNA glycosylase7e-21102
NC_013202:418500:429258429258430046789Halomicrobium mukohataei DSM 12286, complete genomeHhH-GPD family protein8e-21101
NC_016885:417661:424887424887425492606Pyrobaculum oguniense TE7 chromosome, complete genomeA/G-specific DNA glycosylase2e-1997.1
NC_015389:1858732:186041118604111861073663Coriobacterium glomerans PW2 chromosome, complete genomeendonuclease III; DNA-(apurinic or apyrimidinic site) lyase3e-1583.2
NC_019977:253895:253895253895254521627Methanomethylovorans hollandica DSM 15978, complete genomeputative endoIII-related endonuclease4e-1582.8
NC_014033:1664500:168073716807371681372636Prevotella ruminicola 23 chromosome, complete genomeendonuclease III4e-1582.8
NC_014958:2614399:263067826306782631352675Deinococcus maricopensis DSM 21211 chromosome, complete genomeendonuclease III5e-1582.4
NC_013790:2030960:205264820526482053295648Methanobrevibacter ruminantium M1 chromosome, complete genomeendonuclease III Nth2e-1480.9
NC_013943:2857751:287617528761752876807633Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeendonuclease III3e-1480.1
NC_010730:1519458:153893315389331539562630Sulfurihydrogenibium sp. YO3AOP1, complete genomeendonuclease III3e-1479.7
NC_012808:3972983:399367739936773994393717Methylobacterium extorquens AM1, complete genomeputative Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)1e-1378.2
NC_002578:828000:838948838948839601654Thermoplasma acidophilum DSM 1728, complete genomeEndonuclease III2e-1377.8
NC_015474:72103:726657266573327663Pyrococcus sp. NA2 chromosome, complete genomeendonuclease III2e-1377.4
NC_015277:689519:697639697639698304666Sphingobacterium sp. 21 chromosome, complete genomeendonuclease III3e-1273.6
NC_016633:14000:342033420334850648Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative endoIII-related endonuclease2e-1273.6
NC_017080:2893224:289780228978022898482681Phycisphaera mikurensis NBRC 102666, complete genomeDNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase3e-1273.2
NC_008148:2231045:223822522382252238920696Rubrobacter xylanophilus DSM 9941, complete genomeHhH-GPD6e-1272.4
NC_005835:1773482:179978517997851800447663Thermus thermophilus HB27, complete genomeendonuclease III1e-1171.2
NC_005213:202400:346125346125346763639Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-1170.9
NC_005213:295994:346125346125346763639Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-1170.9
NC_015278:538500:555678555678556340663Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeendonuclease III3e-1170.1
NC_007530:1459412:147977614797761480423648Bacillus anthracis str. 'Ames Ancestor', complete genomeendonuclease iii6e-1168.9
NC_005945:1459357:147973014797301480377648Bacillus anthracis str. Sterne, complete genomeendonuclease III6e-1168.9
NC_011060:459615:495148495148495786639Pelodictyon phaeoclathratiforme BU-1, complete genomeendonuclease III1e-1067.8
NC_017098:1542284:154161915416191542287669Spirochaeta africana DSM 8902 chromosome, complete genomeendonuclease III2e-1067
NC_014935:918855:937571937571938227657Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeDNA-(apurinic or apyrimidinic site) lyase3e-1066.6
NC_010475:2537500:255170825517082552370663Synechococcus sp. PCC 7002, complete genomeendonuclease III7e-1065.5
NC_009615:1305678:132200113220011322666666Parabacteroides distasonis ATCC 8503 chromosome, complete genomeendonuclease III8e-1065.1
NC_020419:977778:990626990626991264639Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeendonuclease III1e-0964.7
NS_000191:977778:990626990626991264639Uncultured Termite group 1 bacterium phylotype Rs-D17, completeendonuclease III1e-0964.7
NC_015501:868909:891049891049891708660Porphyromonas asaccharolytica DSM 20707 chromosome, completeendonuclease III1e-0964.7
NC_019978:875941:878128878128878763636Halobacteroides halobius DSM 5150, complete genomeendonuclease III2e-0964.3
NC_016077:702000:720279720279720911633Acidaminococcus intestini RyC-MR95 chromosome, complete genomeendonuclease III4e-0962.8
NC_008618:1804610:182313718231371823802666Bifidobacterium adolescentis ATCC 15703, complete genomeendonuclease III4e-0962.8
NC_014393:1590893:163811916381191638772654Clostridium cellulovorans 743B chromosome, complete genomeendonuclease III9e-0961.6
NC_008576:2011959:201537820153782016037660Magnetococcus sp. MC-1, complete genomeendonuclease III4e-0859.7
NC_015566:2328771:234376123437612344396636Serratia sp. AS12 chromosome, complete genomeendonuclease III4e-0859.7
NC_006833:449132:463878463878464516639Wolbachia endosymbiont strain TRS of Brugia malayi, completePredicted EndoIII-related endonuclease4e-0859.7
NC_015567:2328782:234377223437722344407636Serratia sp. AS9 chromosome, complete genomeendonuclease III4e-0859.7
NC_009511:187508:205257205257205913657Sphingomonas wittichii RW1 chromosome, complete genomeendonuclease III / DNA-(apurinic or apyrimidinic site) lyase7e-0858.9
NC_010336:1670000:168975516897551690393639Francisella philomiragia subsp. philomiragia ATCC 25017, completeDNA-(apurinic or apyrimidinic site) lyase7e-0858.9
NC_016885:417661:421107421107421496390Pyrobaculum oguniense TE7 chromosome, complete genomeA/G-specific DNA glycosylase8e-0858.5
NC_010519:1764261:178224917822491782884636Haemophilus somnus 2336 chromosome, complete genomeendonuclease III8e-0858.5
NC_015588:2939747:293974729397472940478732Isoptericola variabilis 225 chromosome, complete genomeendonuclease III1e-0758.2
NC_005070:1331741:133349713334971334150654Synechococcus sp. WH 8102, complete genomeputative endonuclease1e-0757.8
NC_010718:517473:520731520731521387657Natranaerobius thermophilus JW/NM-WN-LF, complete genomeDNA-(apurinic or apyrimidinic site) lyase, endonuclease III2e-0757.4
NC_008577:2604281:260678026067802607415636Shewanella sp. ANA-3 chromosome 1, complete sequenceendonuclease III8e-0755.5
NC_010337:98974:101538101538102233696Heliobacterium modesticaldum Ice1, complete genomebase excision repair protein, hhh-gpd family1e-0654.7
NC_015424:2836920:285583528558352856476642Aeromonas veronii B565 chromosome, complete genomeendonuclease III1e-0654.3
NC_013510:5499447:549944754994475500187741Thermomonospora curvata DSM 43183, complete genomeendonuclease III2e-0654.3