Pre_GI: BLASTP Hits

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Query: NC_004088:3186954:3204538 Yersinia pestis KIM, complete genome

Start: 3204538, End: 3205179, Length: 642

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017160:1299733:131716013171601317774615Yersinia pestis D182038 chromosome, complete genomeelongation factor P7e-117419
NC_017154:1454704:145603714560371456651615Yersinia pestis D106004 chromosome, complete genomeelongation factor P7e-117419
NC_014029:1512605:151393815139381514552615Yersinia pestis Z176003 chromosome, complete genomeelongation factor P7e-117419
NC_010159:1558000:155941215594121560026615Yersinia pestis Angola, complete genome7e-117419
NC_010634:1565788:156712115671211567693573Yersinia pseudotuberculosis PB1/+, complete genomeelongation factor P-like protein YeiP1e-107389
NC_005810:1413305:143097314309731431545573Yersinia pestis biovar Microtus str. 91001, complete genomeelongation factor P1e-107389
NC_010465:3046904:306460830646083065180573Yersinia pseudotuberculosis YPIII, complete genomeelongation factor P-like protein YeiP1e-107389
NC_003143:1441211:144254414425441443116573Yersinia pestis CO92, complete genomeelongation factor P1e-107389
NC_008149:3022970:304061530406153041187573Yersinia pestis Nepal516, complete genomeelongation factor P1e-107389
NC_006155:1567306:156863915686391569211573Yersinia pseudotuberculosis IP 32953, complete genomeelongation factor P1e-107389
NC_009381:2731965:274960927496092750181573Yersinia pestis Pestoides F chromosome, complete genomeelongation factor P1e-107389
NC_009708:3035798:305349030534903054062573Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeelongation factor P1e-107389
NC_017168:4363000:436460443646044365176573Yersinia pestis A1122 chromosome, complete genomeelongation factor P1e-107389
NC_017265:2807302:282495628249562825528573Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Translation elongation factor P-relatedprotein1e-107389
NC_014121:3553809:356793235679323568504573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeelongation factor P4e-86317
NC_015276:1531159:153896015389601539526567Marinomonas mediterranea MMB-1 chromosome, complete genomeElongation factor P-like protein2e-52205
NC_010513:1443787:146200814620081462574567Xylella fastidiosa M12 chromosome, complete genomeelongation factor P3e-34144
NC_010577:1456909:147590914759091476475567Xylella fastidiosa M23, complete genomeelongation factor P-like protein YeiP4e-34144
NC_014973:4630132:464782946478294648392564Geobacter sp. M18 chromosome, complete genometranslation elongation factor P2e-28125
NC_011146:482440:490423490423490986564Geobacter bemidjiensis Bem, complete genometranslation elongation factor P3e-28125
NC_011661:1049767:105685710568571057414558Dictyoglomus turgidum DSM 6724, complete genometranslation elongation factor P1e-24112
NC_014652:666227:677993677993678550558Caldicellulosiruptor hydrothermalis 108 chromosome, completetranslation elongation factor p2e-23109
NC_015949:2002752:201260520126052013162558Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeElongation factor P2e-23108
NC_007793:1633080:164441816444181644975558Staphylococcus aureus subsp. aureus USA300, complete genometranslation elongation factor P1e-22106
NC_013521:1976331:199696919969691997532564Sanguibacter keddieii DSM 10542, complete genometranslation elongation factor P (EF-P)1e-22106
NC_007109:1105251:110855611085561109122567Rickettsia felis URRWXCal2, complete genomeelongation factor P2e-22105
NC_013939:420500:437277437277437846570Deferribacter desulfuricans SSM1, complete genometranslation elongation factor P3e-22105
NC_015737:2691246:271688127168812717438558Clostridium sp. SY8519, complete genomehypothetical protein5e-21100
NC_014219:2491021:250029925002992500856558Bacillus selenitireducens MLS10 chromosome, complete genometranslation elongation factor P7e-21100
NC_008255:1764585:178653517865351787095561Cytophaga hutchinsonii ATCC 33406, complete genomeelongation factor P (EF-P)9e-21100
NC_009439:2337024:235230123523012352873573Pseudomonas mendocina ymp, complete genometranslation initiation factor 5A (eIF-5A)1e-2099.8
NC_006677:215466:251029251029251595567Gluconobacter oxydans 621H, complete genomeProtein Translation Elongation Factor P (EF-P)1e-2099.4
NC_013169:1290000:130333713033371303951615Kytococcus sedentarius DSM 20547, complete genometranslation elongation factor P (EF-P)2e-2098.6
NC_009488:903000:917679917679918248570Orientia tsutsugamushi str. Boryong, complete genomeelongation factor P3e-2098.2
NC_014638:1509637:151500815150081515571564Bifidobacterium bifidum PRL2010 chromosome, complete genomeprotein translation elongation Factor P (EF-P)3e-2098.2
NC_007951:3655088:368735136873513687908558Burkholderia xenovorans LB400 chromosome 1, complete sequenceElongation factor P (EF-P)5e-2097.8
NC_015410:2838132:284474428447442845283540Pseudomonas mendocina NK-01 chromosome, complete genometranslation initiation factor 5A6e-2097.4
NC_013124:1784117:179990917999091800478570Acidimicrobium ferrooxidans DSM 10331, complete genometranslation elongation factor P1e-1996.3
NC_007298:2170181:218586521858652186422558Dechloromonas aromatica RCB, complete genomeelongation factor P3e-1995.1
NC_016630:864601:879660879660880217558Filifactor alocis ATCC 35896 chromosome, complete genometranslation elongation factor P3e-1995.1
NC_020409:437781:463208463208463765558Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeElongation factor P4e-1994.7
NC_015064:2871152:288988328898832890458576Acidobacterium sp. MP5ACTX9 chromosome, complete genometranslation elongation factor P4e-1994.4
NC_015499:119200:128263128263128832570Thermodesulfobium narugense DSM 14796 chromosome, complete genomeElongation factor P6e-1994.4
NC_003062:2506959:252689125268912527460570Agrobacterium tumefaciens str. C58 chromosome circular, completeelongation factor P1e-1893.2
NC_003304:2507000:252700425270042527573570Agrobacterium tumefaciens str. C58 chromosome circular, completeelongation factor P1e-1893.2
NC_014734:2285762:230771623077162308279564Paludibacter propionicigenes WB4 chromosome, complete genometranslation elongation factor p (ef-p)1e-1892.8
NC_014834:3130715:318949531894953190061567Rhodopseudomonas palustris DX-1 chromosome, complete genometranslation elongation factor P2e-1892.4
NC_015672:1921023:194763419476341948206573Flexistipes sinusarabici DSM 4947 chromosome, complete genomeElongation factor P4e-1891.7
NC_015183:2483653:250699425069942507563570Agrobacterium sp. H13-3 chromosome, complete genomeelongation factor P3e-1891.7
NC_016803:465453:483095483095483652558Desulfovibrio desulfuricans ND132 chromosome, complete genometranslation elongation factor P6e-1890.9
NC_015557:278000:291083291083291667585Hydrogenobaculum sp. 3684 chromosome, complete genomeElongation factor P1e-1790.1
NC_015587:278000:291119291119291703585Hydrogenobaculum sp. SHO chromosome, complete genometranslation elongation factor P1e-1790.1
NC_020411:278000:291115291115291699585Hydrogenobaculum sp. HO, complete genometranslation elongation factor P1e-1790.1
NC_009952:2217877:221787722178772218518642Dinoroseobacter shibae DFL 12, complete genometranslation elongation factor P1e-1789.7
NC_014560:171931:180497180497181060564Helicobacter pylori SJM180 chromosome, complete genomeelongation factor P2e-1789
NC_016629:3308329:332045833204583321015558Desulfovibrio africanus str. Walvis Bay chromosome, completeelongation factor P3e-1788.6
NC_013204:2955500:297659129765912977151561Eggerthella lenta DSM 2243, complete genometranslation elongation factor P5e-1787.8
NC_013222:2595315:259625125962512596820570Robiginitalea biformata HTCC2501, complete genomeelongation factor P2e-1685.9
NC_015740:2614317:261821326182132618779567Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeelongation factor P2e-1685.9
NC_008344:1364142:136662613666261367183558Nitrosomonas eutropha C91, complete genometranslation elongation factor P2e-1685.5
NC_015381:1173603:117526911752691175826558Burkholderia gladioli BSR3 chromosome 1, complete sequenceTranslation elongation factor P3e-1685.1
NC_003366:2106937:210915821091582109715558Clostridium perfringens str. 13, complete genomeelongation factor P5e-1684.3
NC_015696:47484:600606006060629570Francisella sp. TX077308 chromosome, complete genometranslation elongation factor P6e-1684.3
NC_006055:456711:476265476265476822558Mesoplasma florum L1, complete genometranslation elongation factor P7e-1684
NC_003911:1265972:131316313131631313726564Silicibacter pomeroyi DSS-3, complete genomeelongation factor P8e-1683.6
NC_012796:2683711:268696826869682687525558Desulfovibrio magneticus RS-1, complete genomeelongation factor P1e-1583.6
NC_002935:1315019:135348313534831354046564Corynebacterium diphtheriae NCTC 13129, complete genomeelongation factor P1e-1583.2
NC_016782:1316467:132717513271751327738564Corynebacterium diphtheriae 241 chromosome, complete genomeelongation factor P1e-1583.2
NC_016783:1313008:135147413514741352037564Corynebacterium diphtheriae INCA 402 chromosome, complete genomeelongation factor P1e-1583.2
NC_016785:1297208:130875813087581309321564Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeelongation factor P1e-1583.2
NC_016786:1316436:132714513271451327708564Corynebacterium diphtheriae HC01 chromosome, complete genomeelongation factor P1e-1583.2
NC_016787:1276983:131659313165931317156564Corynebacterium diphtheriae HC03 chromosome, complete genomeelongation factor P1e-1583.2
NC_016788:1315877:132658513265851327148564Corynebacterium diphtheriae HC04 chromosome, complete genomeelongation factor P1e-1583.2
NC_016789:1334514:137298213729821373545564Corynebacterium diphtheriae PW8 chromosome, complete genomeelongation factor P1e-1583.2
NC_016790:1259356:129397512939751294538564Corynebacterium diphtheriae VA01 chromosome, complete genomeelongation factor P1e-1583.2
NC_016799:1343020:138262713826271383190564Corynebacterium diphtheriae 31A chromosome, complete genomeelongation factor P1e-1583.2
NC_016800:1344189:135573913557391356302564Corynebacterium diphtheriae BH8 chromosome, complete genomeelongation factor P1e-1583.2
NC_016801:1361597:137230213723021372865564Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeelongation factor P1e-1583.2
NC_016802:1317365:132807413280741328637564Corynebacterium diphtheriae HC02 chromosome, complete genomeelongation factor P1e-1583.2
NC_009997:2585588:260324126032412603801561Shewanella baltica OS195, complete genometranslation elongation factor P1e-1582.8
NC_016901:2542110:256315825631582563718561Shewanella baltica OS678 chromosome, complete genometranslation elongation factor P1e-1582.8
NC_009483:2489000:250404125040412504604564Geobacter uraniireducens Rf4 chromosome, complete genomeelongation factor P4e-1581.3
NC_012225:2523262:252457725245772525140564Brachyspira hyodysenteriae WA1, complete genometranslation elongation factor P (EF-P)5e-1580.9
NC_015501:1200411:122101212210121221578567Porphyromonas asaccharolytica DSM 20707 chromosome, completeElongation factor P6e-1580.9
NC_017243:2778427:279092227909222791485564Brachyspira intermedia PWS/A chromosome, complete genometranslation elongation factor P (EF-P)7e-1580.5
NC_011979:3045952:305291330529133053476564Geobacter sp. FRC-32, complete genometranslation elongation factor P9e-1580.1
NC_005303:272915:317585317585318154570Onion yellows phytoplasma OY-M, complete genometranslation elongation factor EF-P1e-1480.1
NC_015726:2177783:218632521863252186903579Cupriavidus necator N-1 chromosome 1, complete sequencetranslation elongation factor P2e-1479.3
NC_017187:1923733:192940319294031929963561Arcobacter butzleri ED-1, complete genomeelongation factor P2e-1479
NC_002162:333303:340721340721341287567Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomeelongation factor P3e-1478.6
NC_020181:3518396:352150435215043522070567Enterobacter aerogenes EA1509E, complete genomeTranslation elongation factor P5e-1477.8
NC_015663:1934863:194912519491251949691567Enterobacter aerogenes KCTC 2190 chromosome, complete genomeelongation factor P5e-1477.8
NC_008095:7139056:714452971445297145107579Myxococcus xanthus DK 1622, complete genometranslation elongation factor P5e-1477.8
NC_009648:4958500:497728549772854977851567Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeelongation factor P4e-1477.8
NC_013850:4993307:499643149964314996997567Klebsiella variicola At-22 chromosome, complete genometranslation elongation factor P4e-1477.8
NC_011283:5170683:517306351730635173629567Klebsiella pneumoniae 342 chromosome, complete genomeelongation factor P4e-1477.8
NC_012731:403670:422415422415422981567Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeelongation factor P4e-1477.8
NC_016845:411844:430919430919431485567Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,elongation factor P4e-1477.8
NC_011565:385454:398743398743399306564Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,elongation factor P6e-1477.4
NC_002771:606491:626345626345626908564Mycoplasma pulmonis UAB CTIP, complete genomeelongation factor P6e-1477.4
NC_012026:415447:425464425464426030567Anaplasma marginale str. Florida, complete genomeelongation factor P EF-P (efp)6e-1477.4
NC_014935:342491:344338344338344901564Nitratifractor saLSUginis DSM 16511 chromosome, complete genometranslation elongation factor p (ef-p)9e-1477
NC_015702:2902934:290293429029342903503570Parachlamydia acanthamoebae UV7, complete genomeelongation factor P 21e-1376.6
NC_015711:8909256:891475389147538915331579Myxococcus fulvus HW-1 chromosome, complete genomeelongation factor P2e-1375.9
NC_014166:455378:470858470858471421564Arcobacter nitrofigilis DSM 7299 chromosome, complete genometranslation elongation factor P3e-1375.5
NC_015321:4142843:415646541564654157031567Fluviicola taffensis DSM 16823 chromosome, complete genometranslation elongation factor P (EF-P)4e-1375.1
NC_007712:532500:555270555270555836567Sodalis glossinidius str. 'morsitans', complete genomeelongation factor P7e-1373.9
NC_002950:1334500:135198313519831352549567Porphyromonas gingivalis W83, complete genomeelongation factor P7e-1373.9
NC_010729:1549744:156549015654901566056567Porphyromonas gingivalis ATCC 33277, complete genomeelongation factor P1e-1273.2
NC_015571:2273503:227458122745812275147567Porphyromonas gingivalis TDC60, complete genomeelongation factor P1e-1273.2
NC_016612:1840325:185898618589861859552567Klebsiella oxytoca KCTC 1686 chromosome, complete genomeelongation factor P1e-1273.2
NC_002936:797110:798044798044798610567Dehalococcoides ethenogenes 195, complete genometranslation elongation factor P6e-1270.9
NC_010741:546573:568865568865569428564Treponema pallidum subsp. pallidum SS14, complete genometranslation elongation factor P8e-1270.5
NC_000919:545141:567433567433567996564Treponema pallidum subsp. pallidum str. Nichols, complete genometranslation elongation factor P (efp)8e-1270.5
NC_016842:546661:568954568954569517564Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeelongation factor P8e-1270.5
NC_016843:547149:569442569442570005564Treponema pallidum subsp. pertenue str. Gauthier chromosome,elongation factor P8e-1270.5
NC_016844:547069:569362569362569925564Treponema pallidum subsp. pallidum DAL-1 chromosome, completeelongation factor P8e-1270.5
NC_016848:547115:569408569408569971564Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeelongation factor P8e-1270.5
NC_017268:546376:568669568669569232564Treponema pallidum subsp. pallidum str. Chicago chromosome,translation elongation factor P8e-1270.5
NC_021508:546592:568885568885569448564Treponema pallidum subsp. pallidum SS14, complete genomeelongation factor P8e-1270.5
NC_015714:542679:564978564978565541564Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeelongation factor P1e-1170.1
NC_000117:845141:884508884508885080573Chlamydia trachomatis D/UW-3/CX, complete genomeelongation factor P9e-1270.1
NC_016001:2421580:244366424436642444230567Flavobacterium branchiophilum, complete genomeelongation factor P (EF-P)2e-1169.3
NC_011244:213853:230861230861231439579Borrelia recurrentis A1, complete genomeelongation factor EF-P3e-1065.1
NC_010673:205500:218194218194218772579Borrelia hermsii DAH, complete genomeprotein translation elongation factor P (EF-P)1e-0859.7
NC_005061:65861:765787657877141564Candidatus Blochmannia floridanus, complete genomeelongation factor P (EF-P)5e-0754.3