Pre_GI: BLASTP Hits

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Query: NC_004088:2366000:2379948 Yersinia pestis KIM, complete genome

Start: 2379948, End: 2380808, Length: 861

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017265:2087487:210164521016452102505861Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative LysR-family transcriptional regulatory protein1e-157555
NC_006155:2461262:246669524666952467555861Yersinia pseudotuberculosis IP 32953, complete genomeputative LysR-family transcriptional regulatory protein1e-157555
NC_008150:1705152:171136117113611712221861Yersinia pestis Antiqua, complete genomeputative LysR-family transcriptional regulatory protein1e-157555
NC_008149:1842500:184801318480131848873861Yersinia pestis Nepal516, complete genomeLysR-family transcriptional regulatory protein1e-157555
NC_003143:2433190:243939924393992440259861Yersinia pestis CO92, complete genomeputative LysR-family transcriptional regulatory protein1e-157555
NC_005810:2180303:218854021885402189400861Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator1e-157555
NC_010634:2376245:238449223844922385352861Yersinia pseudotuberculosis PB1/+, complete genomeLysR family transcriptional regulator1e-157555
NC_017154:2430093:243630224363022437162861Yersinia pestis D106004 chromosome, complete genomeLysR-family transcriptional regulatory protein8e-157552
NC_008800:2448583:246144624614462462306861Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,LysR family transcriptional regulator7e-146516
NC_015224:2618192:263074726307472631607861Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,LysR family transcriptional regulator2e-145514
NC_010159:2440947:245229424522942452923630Yersinia pestis Angola, complete genome6e-109393
NC_009708:483253:494332494332495219888Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLysR family transcriptional regulator1e-1067
NC_015224:4028150:403274040327404033606867Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative lysR-family transcriptional regulator2e-1066.2
NC_008150:4140804:415171141517114152577867Yersinia pestis Antiqua, complete genomeputative lysR-family transcriptional regulatory protein4e-1065.5
NC_003143:4105754:411667141166714117537867Yersinia pestis CO92, complete genomeputative lysR-family transcriptional regulatory protein4e-1065.5
NC_010159:1208699:121501812150181215884867Yersinia pestis Angola, complete genometranscriptional regulator, LysR family4e-1065.5
NC_008149:3966586:397256439725643973430867Yersinia pestis Nepal516, complete genomelysR-family transcriptional regulatory protein4e-1065.5
NC_009381:321577:332495332495333361867Yersinia pestis Pestoides F chromosome, complete genomeLysR family transcriptional regulator4e-1065.5
NC_017168:1729922:174083917408391741705867Yersinia pestis A1122 chromosome, complete genomeLysR family transcriptional regulator4e-1065.5
NC_017265:4171500:417670041767004177566867Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative lysR-family transcriptional regulatory protein4e-1065.5
NC_005810:4381182:438748643874864388361876Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator4e-1065.5
NC_004088:179775:185744185744186619876Yersinia pestis KIM, complete genometranscriptional regulator4e-1065.5
NC_006155:4210606:421692042169204217786867Yersinia pseudotuberculosis IP 32953, complete genomeputative lysR-family transcriptional regulatory protein5e-1065.1
NC_020418:1364943:136860713686071369488882Morganella morganii subsp. morganii KT, complete genometranscriptional regulator, LysR family9e-1064.3
NC_014840:205723:242622242622243512891Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, LysR family1e-0757.8
NC_015601:1463500:147507214750721475968897Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeLysR family transcriptional regulator1e-0757.4
NC_007337:10464:237412374124427687Ralstonia eutropha JMP134 plasmid 1, complete sequenceregulatory protein, LysR1e-0757
NC_012792:310443:326696326696327595900Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, LysR family2e-0756.6
NC_013971:3117000:313444531344453135245801Erwinia amylovora ATCC 49946 chromosome, complete genomeLysR family transcriptional regulator2e-0756.2
NC_013961:629307:636056636056636856801Erwinia amylovora, complete genometranscriptional regulator of levansucrase2e-0756.2
NC_014500:4691915:469585346958534696839987Dickeya dadantii 3937 chromosome, complete genomeLysR-family transcriptional regulator4e-0755.8
CP002185:1493280:149328014932801494188909Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator3e-0755.8
NC_005363:3562205:359199735919973592869873Bdellovibrio bacteriovorus HD100, complete genomeputative LysR-family transcriptional regulator4e-0755.5
NC_016622:82418:103229103229104170942Azospirillum lipoferum 4B, complete genomeLysR family transcriptional regulator5e-0755.1
NC_015696:486250:488062488062488916855Francisella sp. TX077308 chromosome, complete genomeglycine cleavage system transcriptional activator GcvA7e-0754.7
NC_016935:2347691:238727523872752388177903Paenibacillus mucilaginosus 3016 chromosome, complete genomeLysR family transcriptional regulator8e-0754.7
NC_011144:2674242:269478826947882695705918Phenylobacterium zucineum HLK1, complete genometranscriptional regulator, LysR family8e-0754.7
NC_020291:2487575:250875825087582509675918Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator1e-0654.3
NC_012880:135508:151594151594152502909Dickeya dadantii Ech703, complete genometranscriptional regulator, LysR family1e-0654.3
NC_015690:1818333:185740218574021858304903Paenibacillus mucilaginosus KNP414 chromosome, complete genomeLysR family transcriptional regulator8e-0754.3
NC_021182:3525523:355688435568843557816933Clostridium pasteurianum BC1, complete genometranscriptional regulator1e-0653.9
NC_008391:404388:405887405887406873987Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, LysR family1e-0653.9
NC_015727:1076927:108784310878431088742900Cupriavidus necator N-1 plasmid BB1p, complete sequenceLysR family transcriptional regulator2e-0653.5
NC_016935:2567039:259170025917002592572873Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator2e-0653.5
NC_014650:475662:500063500063500962900Geobacillus sp. Y4.1MC1 chromosome, complete genomeLysR family transcriptional regulator1e-0653.5
NC_006155:1074298:108492010849201085831912Yersinia pseudotuberculosis IP 32953, complete genomeputative LysR-family transcriptional regulatory protein1e-0653.5
NC_005810:754340:765018765018765929912Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator1e-0653.5
NC_004088:1075454:108528210852821086193912Yersinia pestis KIM, complete genomeLysR-type transcriptional regulatory protein1e-0653.5
NC_008150:3015000:302406730240673024978912Yersinia pestis Antiqua, complete genomeputative LysR-family transcriptional regulatory protein1e-0653.5
NC_003143:3583468:359238935923893593300912Yersinia pestis CO92, complete genomeputative LysR-family transcriptional regulatory protein1e-0653.5
NC_017265:3375463:338472933847293385640912Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative LysR-family transcriptional regulatory protein1e-0653.5
NC_017168:2158839:216866721686672169578912Yersinia pestis A1122 chromosome, complete genomeputative LysR family transcriptional regulator1e-0653.5
NC_009708:3542336:355125635512563552167912Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLysR family transcriptional regulator1e-0653.5
NC_009381:3228500:323665332366533237564912Yersinia pestis Pestoides F chromosome, complete genomeLysR family transcriptional regulator1e-0653.5
NC_008149:1002453:101228110122811013192912Yersinia pestis Nepal516, complete genomeLysR-family transcriptional regulatory protein1e-0653.5
NC_013517:2815482:282761828276182828487870Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, LysR family6e-0651.6
NC_015557:1232772:125157212515721252495924Hydrogenobaculum sp. 3684 chromosome, complete genometranscriptional regulator, LysR family7e-0651.2
NC_015587:1232642:125144212514421252365924Hydrogenobaculum sp. SHO chromosome, complete genometranscriptional regulator, LysR family7e-0651.2
NC_020411:1232962:125176712517671252690924Hydrogenobaculum sp. HO, complete genometranscriptional regulator, LysR family7e-0651.2
NC_011126:1241655:126042712604271261350924Hydrogenobaculum sp. Y04AAS1, complete genometranscriptional regulator, LysR family7e-0651.2