Pre_GI: BLASTN Hits

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Query: NC_003903:260796 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 260796, End: 281178, Length: 20383

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:38170003817000385464537646Streptomyces coelicolor A3(2), complete genome03229BLASTN svgBLASTP svg
NC_021177:11871011871013659917890Streptomyces fulvissimus DSM 40593, complete genome5e-32147BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014815:1490957*1490957151776526809Micromonospora sp. L5 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014391:1226922*1226922125015223231Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010572:820008200014493162932Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009921:53714835371483538959918117Frankia sp. EAN1pec, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003888:6470909*6470909649144220534Streptomyces coelicolor A3(2), complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014210:41884484188448421709828651Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-1177.8BLASTN svgBLASTP svg
NC_009921:55319725531972555201920048Frankia sp. EAN1pec, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018750:22703142270314231346543152Streptomyces venezuelae ATCC 10712, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_018524:45998094599809463651236704Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013093:57919615791961581744825488Actinosynnema mirum DSM 43827, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009921:3551036*3551036362235971324Frankia sp. EAN1pec, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014318:61086336108633613113322501Amycolatopsis mediterranei U32 chromosome, complete genome9e-0660BLASTN svgBLASTP svg