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Query: NC_003903:260796:266719 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 266719, End: 266880, Length: 162

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:2473126:248257624825762482884309Kitasatospora setae KM-6054, complete genomeputative transposase3e-1580.5
NC_016109:2065326:207929020792902079598309Kitasatospora setae KM-6054, complete genomeputative transposase3e-1580.5
NC_016582:11878078:119023021190230211902730429Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transposase IS44e-1580.1
NC_016582:1639375:165962316596231659787165Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein3e-1373.9
NC_010572:8493946:851818385181838518650468Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-0857.4
NC_010572:1:272802728027747468Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-0857.4
NC_015957:5225903:523182052318205232287468Streptomyces violaceusniger Tu 4113 chromosome, complete genome7e-0856.2
NC_012721:1986436:199255119925511993339789Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase7e-0855.8
NC_016111:6222461:623352962335296234098570Streptomyces cattleya NRRL 8057, complete genometransposase1e-0755.5
NC_007951:1042291:105402510540251054654630Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase1e-0755.1
NC_012720:114489:132821132821133609789Burkholderia glumae BGR1 plasmid bglu_3p, complete sequenceTransposase2e-0754.7
NC_012721:770651:799046799046799834789Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase2e-0754.7
NC_012720:114489:138752138752139540789Burkholderia glumae BGR1 plasmid bglu_3p, complete sequenceTransposase2e-0754.7
NC_018750:6070260:607913960791396079993855Streptomyces venezuelae ATCC 10712, complete genometransposase2e-0754.7
NC_012721:979656:979656979656980444789Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase2e-0754.3
NC_012721:1052883:106333310633331064121789Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase3e-0753.9
NC_012721:137046:143893143893144681789Burkholderia glumae BGR1 chromosome 2, complete genome3e-0753.9
NC_012724:2547500:255709025570902557752663Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase, IS43e-0753.9
NC_016626:400080:413171413171413686516Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase IS45e-0753.1
NC_014221:3068222:308245630824563083223768Truepera radiovictrix DSM 17093 chromosome, complete genome1e-0548.9