Pre_GI: BLASTP Hits

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Query: NC_003903:167825:198693 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 198693, End: 200354, Length: 1662

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:7706226:7717864771786477194411578Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-35149
NC_014666:1117000:1127033112703311285081476Frankia sp. EuI1c chromosome, complete genomehypothetical protein1e-28128
NC_015067:998500:1009226100922610110011776Bifidobacterium longum subsp. longum JCM 1217, complete genomehypothetical protein2e-1584.3
NC_013521:2924540:2932537293253729363283792Sanguibacter keddieii DSM 10542, complete genomehypothetical protein2e-1067.8
NC_013441:27877:4675446754483611608Gordonia bronchialis DSM 43247, complete genomehypothetical protein8e-1065.9
NC_009921:1813500:1839212183921218402371026Frankia sp. EAN1pec, complete genomehypothetical protein1e-0655.5