Pre_GI: BLASTP Hits

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Query: NC_003903:167825:189929 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 189929, End: 191446, Length: 1518

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009953:3852436:3865947386594738681452199Salinispora arenicola CNS-205 chromosome, complete genomepeptidase S1 and S6 chymotrypsin/Hap6e-39162
NC_009380:3563421:3576297357629735784952199Salinispora tropica CNB-440 chromosome, complete genomepeptidase S1 and S6, chymotrypsin/Hap4e-38159
NC_009380:3563421:3582542358254235851482607Salinispora tropica CNB-440 chromosome, complete genomepeptidase S1 and S6, chymotrypsin/Hap1e-37157
NC_013093:4522751:4553487455348745550221536Actinosynnema mirum DSM 43827, complete genomepeptidase S1 and S6 chymotrypsin/Hap6e-34145
NC_016111:581143:5952695952695968401572Streptomyces cattleya NRRL 8057, complete genomeesterase6e-33142
NC_016943:4799915:480378748037874804548762Blastococcus saxobsidens DD2, complete genomeSecreted esterase3e-1273.6
NC_015953:5612446:5627665562766556292751611Streptomyces sp. SirexAA-E chromosome, complete genomeFG-GAP repeat-containing protein1e-1068.6
NC_017186:2252438:227459222745922275401810Amycolatopsis mediterranei S699 chromosome, complete genometrypsin-like serine protease6e-1065.9
NC_014318:2252417:227457122745712275380810Amycolatopsis mediterranei U32 chromosome, complete genomesecreted trypsin-like serine protease6e-1065.9
NC_010162:10894592:1089976310899763109015261764Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-0757.8
NC_020126:1943092:1971035197103519729871953Myxococcus stipitatus DSM 14675, complete genomeprotease B2e-0654.7