Pre_GI: BLASTP Hits

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Query: NC_003903:167825:168241 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 168241, End: 168684, Length: 444

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007491:53723:532745327453726453Rhodococcus erythropolis PR4 plasmid pREL1, complete sequencehypothetical protein2e-0961.2
NC_016943:1735057:173670317367031737167465Blastococcus saxobsidens DD2, complete genomeputative TadE membrane protein7e-0959.7
NC_003155:210240:214245214245214706462Streptomyces avermitilis MA-4680, complete genomehypothetical protein4e-0857
NC_017955:3731480:379416237941623794623462Modestobacter marinus, complete genomeTadE membrane protein1e-0755.5
NC_017186:7822448:783770478377047838126423Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-0754.7
NC_014318:7821227:783765878376587838080423Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-0754.7
NC_006085:15246:423984239842907510Propionibacterium acnes KPA171202, complete genomehypothetical protein7e-0752.8