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Query: NC_003888:8613848 Streptomyces coelicolor A3(2), complete genome

Start: 8613848, End: 8632408, Length: 18561

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome02068BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome02060BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome02058BLASTN svgBLASTP svg
NC_003155:62299362299365432631334Streptomyces avermitilis MA-4680, complete genome01110BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete0718BLASTN svgBLASTP svg
NC_018750:65882066588206661440326198Streptomyces venezuelae ATCC 10712, complete genome7e-167595BLASTN svgBLASTP svg
NC_010572:80226980226982859326325Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-142513BLASTN svgBLASTP svg
NC_015957:19600019600021778021781Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-37165BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome7e-31143BLASTN svgBLASTP svg
NC_003155:32097932097933918518207Streptomyces avermitilis MA-4680, complete genome7e-31143BLASTN svgBLASTP svg
NC_021177:23096152309615233757227958Streptomyces fulvissimus DSM 40593, complete genome3e-27131BLASTN svgBLASTP svg
NC_019673:63943196394319646135767039Saccharothrix espanaensis DSM 44229 complete genome1e-23119BLASTN svgBLASTP svg
NC_015514:18177318177320534923577Cellulomonas fimi ATCC 484 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_015514:47793547793550079522861Cellulomonas fimi ATCC 484 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_013757:1888850*1888850193149042641Geodermatophilus obscurus DSM 43160, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_014391:46445004644500466983025331Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015957:51824605182460522128438825Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013169:872698726911060923341Kytococcus sedentarius DSM 20547, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013595:52213305221330524437223043Streptosporangium roseum DSM 43021, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015125:1136734*1136734116252925796Microbacterium testaceum StLB037, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013169:23514752351475238021528741Kytococcus sedentarius DSM 20547, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010407:11144081114408113894624539Clavibacter michiganensis subsp. sepedonicus chromosome, complete6e-0763.9BLASTN svgBLASTP svg
NC_015957:1070500*1070500110058130082Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008595:18445001844500186548520986Mycobacterium avium 104, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013889:17408581740858176918228325Thioalkalivibrio sp. K90mix chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_008146:17480261748026180688658861Mycobacterium sp. MCS, complete genome9e-0660BLASTN svgBLASTP svg
NC_006361:30477883047788307176223975Nocardia farcinica IFM 10152, complete genome9e-0660BLASTN svgBLASTP svg