Pre_GI: BLASTN Hits

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Query: NC_003888:8594500 Streptomyces coelicolor A3(2), complete genome

Start: 8594500, End: 8613841, Length: 19342

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014218:1163513*1163513118653823026Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015145:36571033657103368692829826Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008537:12500125003067618177Arthrobacter sp. FB24 plasmid 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_013131:3473843*3473843349585522013Catenulispora acidiphila DSM 44928, complete genome1e-60242BLASTN svgBLASTP svg
NC_009921:16111321611132163853427403Frankia sp. EAN1pec, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009921:3098271*3098271316510166831Frankia sp. EAN1pec, complete genome1e-32149BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome2e-19105BLASTN svgBLASTP svg
NC_014391:4617688*4617688463728919602Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015312:61752*617528144419693Pseudonocardia dioxanivorans CB1190 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015312:52406535240653526596525313Pseudonocardia dioxanivorans CB1190 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_008271:11995711995713933819382Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_009142:54257635425763544844722685Saccharopolyspora erythraea NRRL 2338, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009142:5647737*5647737567459926863Saccharopolyspora erythraea NRRL 2338, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_009142:27250002725000275437129372Saccharopolyspora erythraea NRRL 2338, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_019673:8161242*8161242818734226101Saccharothrix espanaensis DSM 44229 complete genome1e-0765.9BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003888:85699628569962858809918138Streptomyces coelicolor A3(2), complete genome5e-63250BLASTN svgBLASTP svg
NC_003888:38170003817000385464537646Streptomyces coelicolor A3(2), complete genome9e-46192BLASTN svgBLASTP svg
NC_003888:7028165*7028165706572937565Streptomyces coelicolor A3(2), complete genome03059BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome9e-46192BLASTN svgBLASTP svg
NC_010572:84939468493946855999966054Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-152547BLASTN svgBLASTP svg
NC_010572:113201832018Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-152547BLASTN svgBLASTP svg
NC_015953:2349503*2349503238809938597Streptomyces sp. SirexAA-E chromosome, complete genome5e-29137BLASTN svgBLASTP svg
NC_015953:62123666212366625841846053Streptomyces sp. SirexAA-E chromosome, complete genome02085BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-65258BLASTN svgBLASTP svg
NC_015957:19600019600021778021781Streptomyces violaceusniger Tu 4113 chromosome, complete genome0815BLASTN svgBLASTP svg