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Query: NC_003888:7706226 Streptomyces coelicolor A3(2), complete genome

Start: 7706226, End: 7728259, Length: 22034

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010572:1081236*1081236110592624691Streptomyces griseus subsp. griseus NBRC 13350, complete genome5e-26127BLASTN svgBLASTP svg
NC_013595:73028887302888732647023583Streptosporangium roseum DSM 43021, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_018524:24230162423016245165228637Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015125:222231*22223126106738837Microbacterium testaceum StLB037, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003888:7561923*7561923764778785865Streptomyces coelicolor A3(2), complete genome5e-1487.7BLASTN svgBLASTP svg
NC_013595:3388000*3388000341046122462Streptosporangium roseum DSM 43021, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019673:1988853*1988853204493756085Saccharothrix espanaensis DSM 44229 complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019673:3041936*3041936305959917664Saccharothrix espanaensis DSM 44229 complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007508:47657514765751478898723237Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014318:5586287*5586287562248536199Amycolatopsis mediterranei U32 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014215:1243125*1243125126864225518Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,3e-0971.9BLASTN svgBLASTP svg
NC_011666:2109274*2109274213911129838Methylocella silvestris BL2, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007333:15593211559321158252223202Thermobifida fusca YX, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013131:32225003222500324156619067Catenulispora acidiphila DSM 44928, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:3100515*3100515312110420590Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014168:1294000*1294000132534231343Segniliparus rotundus DSM 44985 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015510:6373937*6373937640259928663Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013947:56828955682895570912926235Stackebrandtia nassauensis DSM 44728 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011145:37500213750021378616436144Anaeromyxobacter sp. K, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_000912:356677*35667738016923493Mycoplasma pneumoniae M129, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006361:2225072*2225072225678031709Nocardia farcinica IFM 10152, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008611:3579500*3579500360709927600Mycobacterium ulcerans Agy99, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012669:2399649*2399649242257022922Beutenbergia cavernae DSM 12333, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013521:2193203*2193203221998826786Sanguibacter keddieii DSM 10542, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014472:3530274*3530274355430524032Flavobacteriales bacterium HTCC2170 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020133:24219652421965244809926135Mycobacterium liflandii 128FXT, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_000908:253979*25397927331819340Mycoplasma genitalium G37, complete genome3e-0661.9BLASTN svgBLASTP svg