Pre_GI: BLASTN Hits

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Query: NC_003888:7337453 Streptomyces coelicolor A3(2), complete genome

Start: 7337453, End: 7376403, Length: 38951

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome01243BLASTN svgBLASTP svg
NC_003155:22110872211087223044019354Streptomyces avermitilis MA-4680, complete genome0829BLASTN svgBLASTP svg
NC_010572:18728401872840190085328014Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-162581BLASTN svgBLASTP svg
NC_007333:810381*81038185466244282Thermobifida fusca YX, complete genome5e-46194BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome6e-27131BLASTN svgBLASTP svg
NC_014666:6940532*6940532696752226991Frankia sp. EuI1c chromosome, complete genome9e-23117BLASTN svgBLASTP svg
NC_013159:50292850292853082127894Saccharomonospora viridis DSM 43017, complete genome1e-21113BLASTN svgBLASTP svg
NC_015859:18986931898693192889630204Corynebacterium variabile DSM 44702 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_014391:34456723445672346889423223Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_013510:17034641703464172659923136Thermomonospora curvata DSM 43183, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_015957:27557092755709278074725039Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_014391:13179571317957134023122275Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007333:11298261129826115911729292Thermobifida fusca YX, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_018681:24478712447871247939431524Nocardia brasiliensis ATCC 700358 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_012490:44254564425456444448419029Rhodococcus erythropolis PR4, complete genome3e-0765.9BLASTN svgBLASTP svg