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Query: NC_003888:7028165 Streptomyces coelicolor A3(2), complete genome

Start: 7028165, End: 7065729, Length: 37565

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:85945008594500861384119342Streptomyces coelicolor A3(2), complete genome03059BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome01897BLASTN svgBLASTP svg
NC_003888:4377000*4377000439557918580Streptomyces coelicolor A3(2), complete genome01895BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome0716BLASTN svgBLASTP svg
NC_010572:80226980226982859326325Streptomyces griseus subsp. griseus NBRC 13350, complete genome0708BLASTN svgBLASTP svg
NC_015953:2349503*2349503238809938597Streptomyces sp. SirexAA-E chromosome, complete genome2e-159571BLASTN svgBLASTP svg
NC_018750:82105008210500823849928000Streptomyces venezuelae ATCC 10712, complete genome1e-68270BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-64256BLASTN svgBLASTP svg
NC_003888:85699628569962858809918138Streptomyces coelicolor A3(2), complete genome9e-63250BLASTN svgBLASTP svg
NC_013131:3473843*3473843349585522013Catenulispora acidiphila DSM 44928, complete genome2e-60242BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-52216BLASTN svgBLASTP svg
NC_015957:52259035225903524815322251Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-43186BLASTN svgBLASTP svg
NC_014391:4617688*4617688463728919602Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-29139BLASTN svgBLASTP svg
NC_003155:399439942455920566Streptomyces avermitilis MA-4680, complete genome9e-26127BLASTN svgBLASTP svg
NC_008271:11995711995713933819382Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence6e-24121BLASTN svgBLASTP svg
NC_015957:51365005136500515422817729Streptomyces violaceusniger Tu 4113 chromosome, complete genome9e-23117BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome3e-19105BLASTN svgBLASTP svg
NC_010572:3314500*3314500334441929920Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome8e-1487.7BLASTN svgBLASTP svg
NC_009142:5647737*5647737567459926863Saccharopolyspora erythraea NRRL 2338, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_009142:27250002725000275437129372Saccharopolyspora erythraea NRRL 2338, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_008537:12500125003067618177Arthrobacter sp. FB24 plasmid 1, complete sequence5e-1281.8BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008699:16731811673181172409950919Nocardioides sp. JS614, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014218:1163513*1163513118653823026Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_011145:14945211494521151310618586Anaeromyxobacter sp. K, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008060:2913671*2913671294708933419Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence5e-0971.9BLASTN svgBLASTP svg
NC_015145:36571033657103368692829826Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_009142:827912*82791284912621215Saccharopolyspora erythraea NRRL 2338, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_009142:28015172801517283231830802Saccharopolyspora erythraea NRRL 2338, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_021177:23096152309615233757227958Streptomyces fulvissimus DSM 40593, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_013530:28195692819569285198132413Xylanimonas cellulosilytica DSM 15894, complete genome4e-0661.9BLASTN svgBLASTP svg