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Query: NC_003888:6853107 Streptomyces coelicolor A3(2), complete genome

Start: 6853107, End: 6873105, Length: 19999

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018750:75404507540450756160921160Streptomyces venezuelae ATCC 10712, complete genome0979BLASTN svgBLASTP svg
NC_014210:23728132372813241181239000Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-57230BLASTN svgBLASTP svg
NC_009664:4696961*4696961475841661456Kineococcus radiotolerans SRS30216, complete genome3e-52214BLASTN svgBLASTP svg
NC_015588:939037*93903796637727341Isoptericola variabilis 225 chromosome, complete genome4e-45190BLASTN svgBLASTP svg
NC_013093:72220007222000724526323264Actinosynnema mirum DSM 43827, complete genome6e-44186BLASTN svgBLASTP svg
NC_014391:13179571317957134023122275Micromonospora aurantiaca ATCC 27029 chromosome, complete genome5e-29137BLASTN svgBLASTP svg
NC_013510:5394432*5394432543843244001Thermomonospora curvata DSM 43183, complete genome7e-25123BLASTN svgBLASTP svg
NC_014666:7222000*7222000724739625397Frankia sp. EuI1c chromosome, complete genome4e-20107BLASTN svgBLASTP svg
NC_015953:62123666212366625841846053Streptomyces sp. SirexAA-E chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_002927:43927684392768441559922832Bordetella bronchiseptica RB50, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_014623:8798820*8798820882346624647Stigmatella aurantiaca DW4/3-1 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002927:12925731292573131262720055Bordetella bronchiseptica RB50, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_021177:2241647*2241647226649824852Streptomyces fulvissimus DSM 40593, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_021150:32009593200959322539424436Azotobacter vinelandii CA6, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014210:4377867*4377867439985221986Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-0867.9BLASTN svgBLASTP svg
NC_012560:32009613200961322539624436Azotobacter vinelandii DJ, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015957:51824605182460522128438825Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015635:48643494864349488758323235Microlunatus phosphovorus NM-1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013169:1410384*1410384143716826785Kytococcus sedentarius DSM 20547, complete genome9e-0660BLASTN svgBLASTP svg
NC_012815:1682872*1682872171014027269Bifidobacterium animalis subsp. lactis DSM 10140, complete genome9e-0660BLASTN svgBLASTP svg
NC_012814:1682500*1682500171042227923Bifidobacterium animalis subsp. lactis Bl-04, complete genome9e-0660BLASTN svgBLASTP svg
NC_008542:2631138*2631138265802226885Burkholderia cenocepacia HI2424 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_008060:1945597*1945597197248126885Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg