Query: NC_003888:5443832 Streptomyces coelicolor A3(2), complete genome
Start: 5443832, End: 5464599, Length: 20768
Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_011886:2950411* | 2950411 | 2986599 | 36189 | Arthrobacter chlorophenolicus A6, complete genome | 2e-34 | 155 | BLASTN svg | BLASTP svg |
NC_015145:2942500* | 2942500 | 2961573 | 19074 | Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008541:3282415* | 3282415 | 3307664 | 25250 | Arthrobacter sp. FB24 chromosome 1, complete sequence | 9e-37 | 163 | BLASTN svg | BLASTP svg |
NC_004463:3857763 | 3857763 | 3876804 | 19042 | Bradyrhizobium japonicum USDA 110, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014151:1033736 | 1033736 | 1056099 | 22364 | Cellulomonas flavigena DSM 20109 chromosome, complete genome | 9e-77 | 295 | BLASTN svg | BLASTP svg |
NC_013223:1349000 | 1349000 | 1381877 | 32878 | Desulfohalobium retbaense DSM 5692, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008278:6717485* | 6717485 | 6740989 | 23505 | Frankia alni ACN14a, complete genome | 9e-74 | 285 | BLASTN svg | BLASTP svg |
NC_009921:8147947* | 8147947 | 8187424 | 39478 | Frankia sp. EAN1pec, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_014830:532122 | 532122 | 550970 | 18849 | Intrasporangium calvum DSM 43043 chromosome, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_015588:95697 | 95697 | 120567 | 24871 | Isoptericola variabilis 225 chromosome, complete genome | 6e-38 | 167 | BLASTN svg | BLASTP svg |
NC_009664:4423829* | 4423829 | 4686013 | 262185 | Kineococcus radiotolerans SRS30216, complete genome | 4e-91 | 343 | BLASTN svg | BLASTP svg |
NC_011894:2618951 | 2618951 | 2663082 | 44132 | Methylobacterium nodulans ORS 2060, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_011894:3885490 | 3885490 | 3908120 | 22631 | Methylobacterium nodulans ORS 2060, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_007614:2675302 | 2675302 | 2700151 | 24850 | Nitrosospira multiformis ATCC 25196 chromosome 1, complete | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_008699:1067855* | 1067855 | 1116677 | 48823 | Nocardioides sp. JS614, complete genome | 3e-123 | 450 | BLASTN svg | BLASTP svg |
NC_007794:1553000 | 1553000 | 1572599 | 19600 | Novosphingobium aromaticivorans DSM 12444, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_007498:2046935 | 2046935 | 2069204 | 22270 | Pelobacter carbinolicus DSM 2380, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_008609:2933468 | 2933468 | 2956113 | 22646 | Pelobacter propionicus DSM 2379, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_016002:2453919 | 2453919 | 2500295 | 46377 | Pseudogulbenkiania sp. NH8B, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015556:2265940* | 2265940 | 2336447 | 70508 | Pseudomonas fulva 12-X chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_013159:3423500 | 3423500 | 3446763 | 23264 | Saccharomonospora viridis DSM 43017, complete genome | 6e-47 | 196 | BLASTN svg | BLASTP svg |
NC_013521:1713416 | 1713416 | 1733599 | 20184 | Sanguibacter keddieii DSM 10542, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_013165:2240377 | 2240377 | 2273761 | 33385 | Slackia heliotrinireducens DSM 20476, complete genome | 7e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_008536:5259438 | 5259438 | 5279365 | 19928 | Solibacter usitatus Ellin6076, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_015594:332432 | 332432 | 350099 | 17668 | Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_013947:6221877 | 6221877 | 6245612 | 23736 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_003888:4927170 | 4927170 | 4974723 | 47554 | Streptomyces coelicolor A3(2), complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_007333:2674596 | 2674596 | 2700477 | 25882 | Thermobifida fusca YX, complete genome | 2e-47 | 198 | BLASTN svg | BLASTP svg |
NC_014931:5594946 | 5594946 | 5615088 | 20143 | Variovorax paradoxus EPS chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012791:4680500 | 4680500 | 4700019 | 19520 | Variovorax paradoxus S110 chromosome 1, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |
NC_008786:266959 | 266959 | 291883 | 24925 | Verminephrobacter eiseniae EF01-2, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |