Pre_GI: BLASTN Hits

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Query: NC_003888:5443832 Streptomyces coelicolor A3(2), complete genome

Start: 5443832, End: 5464599, Length: 20768

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011886:2950411*2950411298659936189Arthrobacter chlorophenolicus A6, complete genome2e-34155BLASTN svgBLASTP svg
NC_015145:2942500*2942500296157319074Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008541:3282415*3282415330766425250Arthrobacter sp. FB24 chromosome 1, complete sequence9e-37163BLASTN svgBLASTP svg
NC_004463:38577633857763387680419042Bradyrhizobium japonicum USDA 110, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014151:10337361033736105609922364Cellulomonas flavigena DSM 20109 chromosome, complete genome9e-77295BLASTN svgBLASTP svg
NC_013223:13490001349000138187732878Desulfohalobium retbaense DSM 5692, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008278:6717485*6717485674098923505Frankia alni ACN14a, complete genome9e-74285BLASTN svgBLASTP svg
NC_009921:8147947*8147947818742439478Frankia sp. EAN1pec, complete genome1e-0560BLASTN svgBLASTP svg
NC_014830:53212253212255097018849Intrasporangium calvum DSM 43043 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_015588:956979569712056724871Isoptericola variabilis 225 chromosome, complete genome6e-38167BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome4e-91343BLASTN svgBLASTP svg
NC_011894:38854903885490390812022631Methylobacterium nodulans ORS 2060, complete genome5e-20107BLASTN svgBLASTP svg
NC_011894:26189512618951266308244132Methylobacterium nodulans ORS 2060, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007614:26753022675302270015124850Nitrosospira multiformis ATCC 25196 chromosome 1, complete4e-0867.9BLASTN svgBLASTP svg
NC_008699:1067855*1067855111667748823Nocardioides sp. JS614, complete genome3e-123450BLASTN svgBLASTP svg
NC_007794:15530001553000157259919600Novosphingobium aromaticivorans DSM 12444, complete genome1e-0560BLASTN svgBLASTP svg
NC_007498:20469352046935206920422270Pelobacter carbinolicus DSM 2380, complete genome1e-0560BLASTN svgBLASTP svg
NC_008609:29334682933468295611322646Pelobacter propionicus DSM 2379, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_016002:24539192453919250029546377Pseudogulbenkiania sp. NH8B, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015556:2265940*2265940233644770508Pseudomonas fulva 12-X chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013159:34235003423500344676323264Saccharomonospora viridis DSM 43017, complete genome6e-47196BLASTN svgBLASTP svg
NC_013521:17134161713416173359920184Sanguibacter keddieii DSM 10542, complete genome1e-0560BLASTN svgBLASTP svg
NC_013165:22403772240377227376133385Slackia heliotrinireducens DSM 20476, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008536:52594385259438527936519928Solibacter usitatus Ellin6076, complete genome7e-19103BLASTN svgBLASTP svg
NC_015594:33243233243235009917668Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete1e-0560BLASTN svgBLASTP svg
NC_013947:62218776221877624561223736Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003888:49271704927170497472347554Streptomyces coelicolor A3(2), complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007333:26745962674596270047725882Thermobifida fusca YX, complete genome2e-47198BLASTN svgBLASTP svg
NC_014931:55949465594946561508820143Variovorax paradoxus EPS chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012791:46805004680500470001919520Variovorax paradoxus S110 chromosome 1, complete genome1e-0560BLASTN svgBLASTP svg
NC_008786:26695926695929188324925Verminephrobacter eiseniae EF01-2, complete genome3e-18101BLASTN svgBLASTP svg