Pre_GI: BLASTN Hits

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Query: NC_003888:4314389 Streptomyces coelicolor A3(2), complete genome

Start: 4314389, End: 4335458, Length: 21070

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008278:874015*87401590122927215Frankia alni ACN14a, complete genome3e-98367BLASTN svgBLASTP svg
NC_013169:20450002045000206559920600Kytococcus sedentarius DSM 20547, complete genome2e-77297BLASTN svgBLASTP svg
NC_011901:491783*49178352043828656Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-62248BLASTN svgBLASTP svg
NC_003295:11277811277813226319486Ralstonia solanacearum GMI1000, complete genome3e-52214BLASTN svgBLASTP svg
NC_011988:924721*92472194733122611Agrobacterium vitis S4 chromosome 2, complete genome3e-46194BLASTN svgBLASTP svg
NC_015593:2103815*2103815214825244438Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete1e-42182BLASTN svgBLASTP svg
NC_015957:1070500*1070500110058130082Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-36161BLASTN svgBLASTP svg
NC_004578:56237835623783565173727955Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-30141BLASTN svgBLASTP svg
NC_009956:883548835411789329540Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequence1e-29139BLASTN svgBLASTP svg
NC_014165:925009250011009917600Thermobispora bispora DSM 43833 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_011896:36344836344838894925502Mycobacterium leprae Br4923, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002677:36343236343238893225501Mycobacterium leprae TN, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010120:144000*14400016559921600Neisseria meningitidis 053442, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_018750:43330644333064436046827405Streptomyces venezuelae ATCC 10712, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014168:19631291963129198626223134Segniliparus rotundus DSM 44985 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013595:9547254*9547254957863931386Streptosporangium roseum DSM 43021, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_006347:2899653*2899653292225722605Bacteroides fragilis YCH46, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003228:2973266*2973266299679923534Bacteroides fragilis NCTC 9343, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005125:11610001161000119835837359Gloeobacter violaceus PCC 7421, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013510:5115500*5115500514328527786Thermomonospora curvata DSM 43183, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_021177:3997727*3997727401925421528Streptomyces fulvissimus DSM 40593, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014210:72371972371974915525437Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-0661.9BLASTN svgBLASTP svg
NC_012982:24152372415237243837423138Hirschia baltica ATCC 49814, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome2e-0661.9BLASTN svgBLASTP svg