Pre_GI: BLASTN Hits

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Query: NC_003888:3893187 Streptomyces coelicolor A3(2), complete genome

Start: 3893187, End: 3917885, Length: 24699

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008578:22267782226778224692120144Acidothermus cellulolyticus 11B, complete genome2e-22115BLASTN svgBLASTP svg
NC_008618:20001720001722396823952Bifidobacterium adolescentis ATCC 15703, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013172:28777222877722290914331422Brachybacterium faecium DSM 4810, complete genome4e-58234BLASTN svgBLASTP svg
NC_013131:97115089711508973462123114Catenulispora acidiphila DSM 44928, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007164:2261644*2261644228587624233Corynebacterium jeikeium K411, complete genome2e-19105BLASTN svgBLASTP svg
NC_012704:2296500*2296500231998023481Corynebacterium kroppenstedtii DSM 44385, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_020054:46541346541348531019898Fibrella aestuarina BUZ 2 drat genome3e-0661.9BLASTN svgBLASTP svg
NC_009921:52200052200056210240103Frankia sp. EAN1pec, complete genome5e-48200BLASTN svgBLASTP svg
NC_009921:36668983666898374071873821Frankia sp. EAN1pec, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009921:5202607*5202607524409941493Frankia sp. EAN1pec, complete genome1e-128468BLASTN svgBLASTP svg
NC_009921:33169623316962334366126700Frankia sp. EAN1pec, complete genome2e-75291BLASTN svgBLASTP svg
NC_009921:38549693854969389148136513Frankia sp. EAN1pec, complete genome4e-73283BLASTN svgBLASTP svg
NC_013169:25815002581500260290921410Kytococcus sedentarius DSM 20547, complete genome9e-56226BLASTN svgBLASTP svg
NC_015635:5222000*5222000524839526396Microlunatus phosphovorus NM-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018681:441014*44101447306232049Nocardia brasiliensis ATCC 700358 chromosome, complete genome1e-42182BLASTN svgBLASTP svg
NC_007677:1354500*1354500141209957600Salinibacter ruber DSM 13855, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003888:38170003817000385464537646Streptomyces coelicolor A3(2), complete genome02194BLASTN svgBLASTP svg
NC_003888:76596397659639770388744249Streptomyces coelicolor A3(2), complete genome02183BLASTN svgBLASTP svg
NC_003888:7561923*7561923764778785865Streptomyces coelicolor A3(2), complete genome5e-20107BLASTN svgBLASTP svg
NC_003888:32134321345153919406Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome02183BLASTN svgBLASTP svg
NC_021177:20347222034722205851023789Streptomyces fulvissimus DSM 40593, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010572:18850018850021341824919Streptomyces griseus subsp. griseus NBRC 13350, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015953:46732467328409937368Streptomyces sp. SirexAA-E chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015953:32270003227000325159924600Streptomyces sp. SirexAA-E chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015953:62123666212366625841846053Streptomyces sp. SirexAA-E chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_018750:60702606070260610109930840Streptomyces venezuelae ATCC 10712, complete genome9e-19103BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007333:32445723244572326976825197Thermobifida fusca YX, complete genome4e-67264BLASTN svgBLASTP svg
NC_013510:5115500*5115500514328527786Thermomonospora curvata DSM 43183, complete genome1e-1799.6BLASTN svgBLASTP svg