Query: NC_003888:3893187 Streptomyces coelicolor A3(2), complete genome
Start: 3893187, End: 3917885, Length: 24699
Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003888:3817000 | 3817000 | 3854645 | 37646 | Streptomyces coelicolor A3(2), complete genome | 0 | 2194 | BLASTN svg | BLASTP svg |
NC_003888:7659639 | 7659639 | 7703887 | 44249 | Streptomyces coelicolor A3(2), complete genome | 0 | 2183 | BLASTN svg | BLASTP svg |
NC_003888:56225 | 56225 | 90043 | 33819 | Streptomyces coelicolor A3(2), complete genome | 0 | 2183 | BLASTN svg | BLASTP svg |
NC_009921:5202607* | 5202607 | 5244099 | 41493 | Frankia sp. EAN1pec, complete genome | 1e-128 | 468 | BLASTN svg | BLASTP svg |
NC_009921:3316962 | 3316962 | 3343661 | 26700 | Frankia sp. EAN1pec, complete genome | 2e-75 | 291 | BLASTN svg | BLASTP svg |
NC_009921:3854969 | 3854969 | 3891481 | 36513 | Frankia sp. EAN1pec, complete genome | 4e-73 | 283 | BLASTN svg | BLASTP svg |
NC_007333:3244572 | 3244572 | 3269768 | 25197 | Thermobifida fusca YX, complete genome | 4e-67 | 264 | BLASTN svg | BLASTP svg |
NC_013172:2877722 | 2877722 | 2909143 | 31422 | Brachybacterium faecium DSM 4810, complete genome | 4e-58 | 234 | BLASTN svg | BLASTP svg |
NC_013169:2581500 | 2581500 | 2602909 | 21410 | Kytococcus sedentarius DSM 20547, complete genome | 9e-56 | 226 | BLASTN svg | BLASTP svg |
NC_009921:522000 | 522000 | 562102 | 40103 | Frankia sp. EAN1pec, complete genome | 5e-48 | 200 | BLASTN svg | BLASTP svg |
NC_018681:441014* | 441014 | 473062 | 32049 | Nocardia brasiliensis ATCC 700358 chromosome, complete genome | 1e-42 | 182 | BLASTN svg | BLASTP svg |
NC_008578:2226778 | 2226778 | 2246921 | 20144 | Acidothermus cellulolyticus 11B, complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_003888:7561923* | 7561923 | 7647787 | 85865 | Streptomyces coelicolor A3(2), complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_007164:2261644* | 2261644 | 2285876 | 24233 | Corynebacterium jeikeium K411, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_018750:6070260 | 6070260 | 6101099 | 30840 | Streptomyces venezuelae ATCC 10712, complete genome | 9e-19 | 103 | BLASTN svg | BLASTP svg |
NC_013510:5115500* | 5115500 | 5143285 | 27786 | Thermomonospora curvata DSM 43183, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_015953:6212366 | 6212366 | 6258418 | 46053 | Streptomyces sp. SirexAA-E chromosome, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_015957:7348269 | 7348269 | 7396717 | 48449 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 8e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_015953:46732 | 46732 | 84099 | 37368 | Streptomyces sp. SirexAA-E chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015953:3227000 | 3227000 | 3251599 | 24600 | Streptomyces sp. SirexAA-E chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_012704:2296500* | 2296500 | 2319980 | 23481 | Corynebacterium kroppenstedtii DSM 44385, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_021177:2034722 | 2034722 | 2058510 | 23789 | Streptomyces fulvissimus DSM 40593, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_003888:32134 | 32134 | 51539 | 19406 | Streptomyces coelicolor A3(2), complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_009921:3666898 | 3666898 | 3740718 | 73821 | Frankia sp. EAN1pec, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013131:9711508 | 9711508 | 9734621 | 23114 | Catenulispora acidiphila DSM 44928, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010572:188500 | 188500 | 213418 | 24919 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015635:5222000* | 5222000 | 5248395 | 26396 | Microlunatus phosphovorus NM-1, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008618:200017 | 200017 | 223968 | 23952 | Bifidobacterium adolescentis ATCC 15703, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007677:1354500* | 1354500 | 1412099 | 57600 | Salinibacter ruber DSM 13855, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_020054:465413 | 465413 | 485310 | 19898 | Fibrella aestuarina BUZ 2 drat genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |