Pre_GI: BLASTN Hits

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Query: NC_003888:32134 Streptomyces coelicolor A3(2), complete genome

Start: 32134, End: 51539, Length: 19406

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018750:77050077050079437823879Streptomyces venezuelae ATCC 10712, complete genome01013BLASTN svgBLASTP svg
NC_015953:62123666212366625841846053Streptomyces sp. SirexAA-E chromosome, complete genome0948BLASTN svgBLASTP svg
NC_013093:45804484580448460069420247Actinosynnema mirum DSM 43827, complete genome8e-68266BLASTN svgBLASTP svg
NC_015434:666692*66669270459937908Verrucosispora maris AB-18-032 chromosome, complete genome8e-28133BLASTN svgBLASTP svg
NC_014391:4672105*4672105470459932495Micromonospora aurantiaca ATCC 27029 chromosome, complete genome4e-23117BLASTN svgBLASTP svg
NC_014391:45705674570567459134920783Micromonospora aurantiaca ATCC 27029 chromosome, complete genome4e-23117BLASTN svgBLASTP svg
NC_013757:3651646*3651646369128339638Geodermatophilus obscurus DSM 43160, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015138:41758314175831419502219192Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_015138:4205986*4205986423312827143Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_015138:5276857*5276857530246825612Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_015138:69386569386571749823634Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_015138:765497*76549779476529269Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_013595:47580344758034478379725764Streptosporangium roseum DSM 43021, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_003888:38170003817000385464537646Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003888:38931873893187391788524699Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003888:76596397659639770388744249Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009142:2480608*2480608252218941582Saccharopolyspora erythraea NRRL 2338, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009142:2822260*2822260285087528616Saccharopolyspora erythraea NRRL 2338, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009142:5647737*5647737567459926863Saccharopolyspora erythraea NRRL 2338, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008752:20565472056547207678720241Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009921:5202607*5202607524409941493Frankia sp. EAN1pec, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009921:33169623316962334366126700Frankia sp. EAN1pec, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_009921:52200052200056210240103Frankia sp. EAN1pec, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009921:38549693854969389148136513Frankia sp. EAN1pec, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015434:25274122527412255409926688Verrucosispora maris AB-18-032 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015259:485015*48501556418379169Polymorphum gilvum SL003B-26A1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_008752:55882855882857802619199Acidovorax avenae subsp. citrulli AAC00-1, complete genome9e-0660BLASTN svgBLASTP svg