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Query: NC_003888:3138905 Streptomyces coelicolor A3(2), complete genome

Start: 3138905, End: 3162697, Length: 23793

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015953:26405002640500266269222193Streptomyces sp. SirexAA-E chromosome, complete genome0961BLASTN svgBLASTP svg
NC_010572:54450815445081548674141661Streptomyces griseus subsp. griseus NBRC 13350, complete genome0898BLASTN svgBLASTP svg
NC_015957:88452748845274887561630343Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-117430BLASTN svgBLASTP svg
NC_003155:92149492149494438122888Streptomyces avermitilis MA-4680, complete genome2e-99371BLASTN svgBLASTP svg
NC_015953:25121522512152253676224611Streptomyces sp. SirexAA-E chromosome, complete genome2e-47198BLASTN svgBLASTP svg
NC_014666:71527827152782717565722876Frankia sp. EuI1c chromosome, complete genome7e-38167BLASTN svgBLASTP svg
NC_015064:29009072900907292546124555Acidobacterium sp. MP5ACTX9 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_010545:23600023600026072024721Corynebacterium urealyticum DSM 7109, complete genome9e-25123BLASTN svgBLASTP svg
NC_003155:62950786295078632109926022Streptomyces avermitilis MA-4680, complete genome1e-23119BLASTN svgBLASTP svg
NC_015312:3675148*3675148374606470917Pseudonocardia dioxanivorans CB1190 chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_010545:1691999*1691999172113729139Corynebacterium urealyticum DSM 7109, complete genome3e-21111BLASTN svgBLASTP svg
NC_014973:1257625*1257625128014722523Geobacter sp. M18 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_020064:4751097*4751097477659925503Serratia marcescens FGI94, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_007760:3848190*3848190387276224573Anaeromyxobacter dehalogenans 2CP-C, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_003888:4251867*4251867430640654540Streptomyces coelicolor A3(2), complete genome2e-1695.6BLASTN svgBLASTP svg
NC_019673:8581000*8581000860834127342Saccharothrix espanaensis DSM 44229 complete genome8e-1693.7BLASTN svgBLASTP svg
NC_011992:86317486317488672923556Acidovorax ebreus TPSY, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014314:23804323804328361945577Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_018750:3661243*3661243368475823516Streptomyces venezuelae ATCC 10712, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_018870:427357*42735744729619940Thermacetogenium phaeum DSM 12270 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010424:1563033*1563033159550932477Candidatus Desulforudis audaxviator MP104C, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014958:629459*62945965461225154Deinococcus maricopensis DSM 21211 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015434:5434500*5434500545318818689Verrucosispora maris AB-18-032 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015690:73347867334786735842623641Paenibacillus mucilaginosus KNP414 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013595:18512261851226187265321428Streptosporangium roseum DSM 43021, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014039:1766049*1766049178641920371Propionibacterium acnes SK137 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009648:4359875*4359875438125321379Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_019897:34676183467618349341225795Thermobacillus composti KWC4 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009348:3029963*3029963306659936637Aeromonas salmonicida subsp. salmonicida A449, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007778:1053462*1053462107959926138Rhodopseudomonas palustris HaA2, complete genome3e-0661.9BLASTN svgBLASTP svg