Pre_GI: BLASTN Hits

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Query: NC_003888:2305901 Streptomyces coelicolor A3(2), complete genome

Start: 2305901, End: 2329452, Length: 23552

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010572:62934176293417631646623050Streptomyces griseus subsp. griseus NBRC 13350, complete genome03646BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome0642BLASTN svgBLASTP svg
NC_013169:1661135*1661135168009918965Kytococcus sedentarius DSM 20547, complete genome0650BLASTN svgBLASTP svg
NC_015588:19657871965787198857522789Isoptericola variabilis 225 chromosome, complete genome0682BLASTN svgBLASTP svg
NC_015514:24146172414617243874024124Cellulomonas fimi ATCC 484 chromosome, complete genome0692BLASTN svgBLASTP svg
NC_014151:23120002312000233474222743Cellulomonas flavigena DSM 20109 chromosome, complete genome0704BLASTN svgBLASTP svg
NC_015671:15408601540860156478123922Cellvibrio gilvus ATCC 13127 chromosome, complete genome0777BLASTN svgBLASTP svg
NC_009664:37189273718927374705528129Kineococcus radiotolerans SRS30216, complete genome0844BLASTN svgBLASTP svg
NC_014210:3763940*3763940379109927160Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,0858BLASTN svgBLASTP svg
NC_018750:20052292005229203059225364Streptomyces venezuelae ATCC 10712, complete genome02753BLASTN svgBLASTP svg
NC_021177:19229301922930194704124112Streptomyces fulvissimus DSM 40593, complete genome03471BLASTN svgBLASTP svg
NC_015953:17564931756493177842421932Streptomyces sp. SirexAA-E chromosome, complete genome03517BLASTN svgBLASTP svg
NC_013510:1786194*1786194181369827505Thermomonospora curvata DSM 43183, complete genome9e-176624BLASTN svgBLASTP svg
NC_010617:14289021428902145226023359Kocuria rhizophila DC2201, complete genome1e-125458BLASTN svgBLASTP svg
NC_008726:39159793915979394187225894Mycobacterium vanbaalenii PYR-1, complete genome2e-109404BLASTN svgBLASTP svg
NC_013595:4951396*4951396497512223727Streptosporangium roseum DSM 43021, complete genome5e-88333BLASTN svgBLASTP svg
NC_013441:27888062788806282218133376Gordonia bronchialis DSM 43247, complete genome3e-74287BLASTN svgBLASTP svg
NC_013947:33471743347174338411536942Stackebrandtia nassauensis DSM 44728 chromosome, complete genome4e-36161BLASTN svgBLASTP svg
NC_019673:16566801656680168172225043Saccharothrix espanaensis DSM 44229 complete genome6e-35157BLASTN svgBLASTP svg
NC_014210:37421123742112376235620245Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,6e-32147BLASTN svgBLASTP svg
NC_013235:40455894045589406814822560Nakamurella multipartita DSM 44233, complete genome2e-31145BLASTN svgBLASTP svg
NC_004369:22039472203947222766523719Corynebacterium efficiens YS-314, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014210:61850061850064662528126Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,7e-1073.8BLASTN svgBLASTP svg
NC_007760:3848190*3848190387276224573Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007508:4593446*4593446461871425269Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008786:13320411332041135577823738Verminephrobacter eiseniae EF01-2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008752:62080262080264468623885Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008752:3902637*3902637393751334877Acidovorax avenae subsp. citrulli AAC00-1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013922:230842*23084226373632895Natrialba magadii ATCC 43099 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006270:741731*74173176874727017Bacillus licheniformis ATCC 14580, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010172:575005750011716259663Methylobacterium extorquens PA1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006322:74151674151677010228587Bacillus licheniformis ATCC 14580, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002977:92558892558894955323966Methylococcus capsulatus str. Bath, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010545:833538335310651623164Corynebacterium urealyticum DSM 7109, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015379:89441*8944111781628376Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,7e-0763.9BLASTN svgBLASTP svg
NC_006396:2057209*2057209208818030972Haloarcula marismortui ATCC 43049 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_007435:19143751914375195826743893Burkholderia pseudomallei 1710b chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009075:922109221012709934890Burkholderia pseudomallei 668 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009078:749547495410871533762Burkholderia pseudomallei 1106a chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_014551:691594*69159471409922506Bacillus amyloliquefaciens DSM 7, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015387:19657111965711198901123301Marinithermus hydrothermalis DSM 14884 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
CP002207:193080*19308021757824499Bacillus atrophaeus 1942, complete genome3e-0661.9BLASTN svgBLASTP svg
UCMB5137:276121*27612129641620296Bacillus atrophaeus UCMB-51373e-0661.9BLASTN svgBLASTP svg
NC_020272:3245834*3245834326920123368Bacillus amyloliquefaciens IT-45, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006351:730007300010112828129Burkholderia pseudomallei K96243 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg