Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8612498 Streptomyces coelicolor A3(2), complete genome

Start: 8612498, End: 8613085, Length: 588

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008782:2781229:2781490278149027825691080Acidovorax sp. JS42, complete genomeIntegrase, catalytic region2e-0755.8
NC_010170:3944228:3945315394531539463821068Bordetella petrii, complete genomeputative transposase8e-0857
NC_004463:1872537:1883214188321418842781065Bradyrhizobium japonicum USDA 110, complete genomeRSalpha putative transposase6e-0857.4
NC_004463:1898648:1904949190494919060131065Bradyrhizobium japonicum USDA 110, complete genomeRSalpha putative transposase1e-0756.6
NC_004463:2059500:2066222206622220672861065Bradyrhizobium japonicum USDA 110, complete genomeRSalpha putative transposase6e-0857.4
NC_004463:1898648:1962417196241719634811065Bradyrhizobium japonicum USDA 110, complete genomeputative transposase1e-0756.6
NC_017249:8283701:829388982938898294836948Bradyrhizobium japonicum USDA 6, complete genometransposase9e-0856.6
NC_017249:8137586:816001481600148160961948Bradyrhizobium japonicum USDA 6, complete genometransposase5e-0857.8
NC_017249:8358438:837020483702048371151948Bradyrhizobium japonicum USDA 6, complete genometransposase5e-0857.8
NC_017249:908500:920362920362921309948Bradyrhizobium japonicum USDA 6, complete genometransposase5e-0857.8
NC_010625:229478:2434062434062444761071Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceintegrase, catalytic region8e-0857
NC_007951:1042291:1047582104758210486521071Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase3e-0652
NC_015724:129331:1308041308041319071104Cupriavidus necator N-1 plasmid BB2p, complete sequencetransposase9e-0650.1
NC_014836:497350:5052555052555063221068Desulfurispirillum indicum S5 chromosome, complete genomeputative transposase5e-0960.8
NC_014836:497350:5037095037095047761068Desulfurispirillum indicum S5 chromosome, complete genomeputative transposase5e-0960.8
NC_008278:5855401:5883223588322358842301008Frankia alni ACN14a, complete genomeTransposase1e-1685.9
NC_009921:3098271:315497631549763155374399Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-51202
NC_013441:5025444:5025444502544450265171074Gordonia bronchialis DSM 43247, complete genomeISRSO5-transposase protein6e-0650.8
NC_015572:1:4060140601416711071Methylomonas methanica MC09 chromosome, complete genomeputative transposase3e-0858.2
NC_017904:2379387:238034723803472381252906Mycobacterium sp. MOTT36Y chromosome, complete genomeISMsm2, transposase2e-0652.4
NC_006361:3047788:305867530586753059424750Nocardia farcinica IFM 10152, complete genomeputative transposase2e-31135
NC_015312:5240653:5245208524520852463111104Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeIntegrase catalytic region1e-34145
NC_019673:8161242:8181272818127281823301059Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS630 family4e-30130
NC_019673:6394319:642768364276836428255573Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-0650.8
NC_009953:3509229:3531373353137335324611089Salinispora arenicola CNS-205 chromosome, complete genomeputative transposase3e-0651.6
NC_016111:3052494:3078576307857630796971122Streptomyces cattleya NRRL 8057, complete genometransposase1e-1479.7
NC_016114:7282882:729034772903477290613267Streptomyces flavogriseus ATCC 33331 chromosome, complete genome1e-23109
NC_010572:8352462:837267383726738373356684Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-52205
NC_010572:8493946:8525297852529785264301134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase1e-87322
NC_010572:1:1950019500206331134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase1e-87322
NC_010572:8352462:837586483758648376523660Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase9e-1993.2
NC_013595:9994000:9994889999488999960101122Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-1686.3
NC_013595:3541012:3550637355063735517671131Streptosporangium roseum DSM 43021, complete genomehypothetical protein4e-1064.3
NC_008786:2809985:2814159281415928151901032Verminephrobacter eiseniae EF01-2, complete genomeIntegrase, catalytic region5e-0650.8
NC_008786:2850736:2851717285171728527781062Verminephrobacter eiseniae EF01-2, complete genomeIntegrase, catalytic region3e-0652