Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8605797 Streptomyces coelicolor A3(2), complete genome

Start: 8605797, End: 8606564, Length: 768

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:196000:217055217055217780726Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator3e-95348
NC_014318:381384:400659400659401450792Amycolatopsis mediterranei U32 chromosome, complete genomeIclR family transcriptional regulator4e-39161
NC_017186:361444:400705400705401463759Amycolatopsis mediterranei S699 chromosome, complete genomeIclR family transcriptional regulator1e-38159
NC_019673:8114376:812535081253508126270921Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, IclR family4e-27121
NC_009077:1725683:177390317739031774607705Mycobacterium sp. JLS, complete genomeregulatory proteins, IclR3e-22105
NC_008705:1839983:185465018546501855354705Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR3e-22105
NC_008705:1839983:184123518412351841939705Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR3e-22105
NC_008699:2260606:228254222825422283318777Nocardioides sp. JS614, complete genomeregulatory proteins, IclR3e-21102
NC_016604:3184855:322144832214483222197750Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator2e-2099.8
NC_018581:759932:767481767481768287807Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator3e-2099
NC_009921:3384116:340073634007363401452717Frankia sp. EAN1pec, complete genometranscriptional regulator, IclR family5e-2098.2
NC_009338:555587:559508559508560155648Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR1e-1894
NC_008726:4725389:473456147345614735364804Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR8e-1890.9
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family7e-1684.3
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family2e-1479.7
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR2e-1375.9
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator7e-1374.3
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator7e-1374.3
NC_008010:105665:109770109770110609840Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family1e-1273.9
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family2e-1272.8
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR3e-1272.4
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21373e-1272.4
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator4e-1272
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator3e-1272
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family7e-1271.2
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family1e-1170.1
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator5e-1168.2
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR9e-1167.4
NC_010473:247429:2617322617322639362205Escherichia coli str. K-12 substr. DH10B, complete genome1e-1067
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-1066.6
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator2e-1066.6
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator2e-1066.6
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator2e-1065.9
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator3e-1065.9
NC_007951:1711223:171944717194471720283837Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family4e-1065.1
NC_008269:868000:875184875184875957774Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencetranscriptional regulator, IclR family5e-1064.7
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI5e-1064.7
NC_015573:813000:839785839785840549765Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIclR family transcriptional regulator6e-1064.7
NC_011725:2949519:296142429614242962176753Bacillus cereus B4264 chromosome, complete genomeIclR family transcriptional regulator5e-0961.6
NC_015724:166246:186530186530187378849Cupriavidus necator N-1 plasmid BB2p, complete sequencetranscriptional regulator IclR family5e-0961.6
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family5e-0961.6
NC_010718:1229355:122935512293551230158804Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family4e-0961.6
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family7e-0961.2
NC_013743:505842:527387527387528151765Haloterrigena turkmenica DSM 5511, complete genometranscriptional regulator, IclR family1e-0860.8
NC_014306:4106569:410656941065694107372804Erwinia billingiae Eb661, complete genomeTranscription regulator9e-0960.8
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator9e-0960.8
NC_015422:1643000:164300416430041643801798Alicycliphilus denitrificans K601 chromosome, complete genomeIclR family transcriptional regulator8e-0960.8
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0860.5
NC_015381:4182194:419460441946044195383780Burkholderia gladioli BSR3 chromosome 1, complete sequenceIclR family transcriptional regulator1e-0860.5
NC_014550:3534000:355058135505813551378798Arthrobacter arilaitensis Re117, complete genomeIclR family transcriptional regulator1e-0860.1
NC_009792:4693152:471779447177944718549756Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0860.1
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator1e-0860.1
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family1e-0860.1
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass3e-0859.3
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family3e-0858.9
NC_016584:593954:606783606783607556774Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator5e-0858.5
NC_019962:1750497:186400218640021864754753Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator5e-0858.2
NC_015588:475723:480113480113480886774Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, IclR family5e-0858.2
NC_015138:2110149:213289621328962133828933Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeIclR family transcriptional regulator7e-0857.8
NC_008596:3404832:341244134124413413250810Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, IclR family protein, putative1e-0756.6
NC_018581:3646489:365874036587403659486747Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator1e-0756.6
NC_012522:7837071:784713078471307848002873Rhodococcus opacus B4, complete genomeputative IclR family transcriptional regulator2e-0756.2
NC_016860:4024000:403866040386604039412753Salmonella enterica subsp. enterica serovar Typhimurium strputative HTH-type transcriptional regulator yfaX5e-0755.1
NC_012691:1250385:127547512754751276257783Tolumonas auensis DSM 9187, complete genometranscriptional regulator, IclR family4e-0755.1
NC_014323:625155:639729639729640526798Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein4e-0755.1
NC_014532:2298628:230572923057292306538810Halomonas elongata DSM 2581, complete genometranscriptional regulator KdgR4e-0755.1
NC_008786:492363:510295510295511062768Verminephrobacter eiseniae EF01-2, complete genome6e-0754.7
NC_013757:3012130:301834030183403019140801Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, IclR family9e-0754.3
NC_010511:6169468:617135461713546172058705Methylobacterium sp. 4-46 chromosome, complete genomeIclR family transcriptional regulator7e-0754.3
NC_008786:2809985:2829239282923928311461908Verminephrobacter eiseniae EF01-2, complete genomeregulatory proteins, IclR7e-0754.3
NC_020302:146807:162161162161162958798Corynebacterium halotolerans YIM 70093 = DSM 44683, completeIclR family transcriptional regulator7e-0754.3
NC_007951:1928906:194549319454931946338846Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family1e-0653.5
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator2e-0653.1
NC_008043:499399:513488513488514279792Silicibacter sp. TM1040 mega plasmid, complete sequencetranscriptional regulator, IclR family2e-0653.1
NC_010505:4396800:440131044013104402062753Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, IclR family2e-0653.1
NC_017955:3057592:306076030607603061566807Modestobacter marinus, complete genomeIclR family transcriptional regulator3e-0652.4
NC_016590:1183470:118606511860651186964900Burkholderia sp. YI23 chromosome 3, complete sequenceIclR family transcriptional regulator3e-0652.4
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator4e-0652
NC_013956:3273340:330305833030583303801744Pantoea ananatis LMG 20103 chromosome, complete genomeYagI4e-0652
NC_010002:1879220:195224719522471953035789Delftia acidovorans SPH-1, complete genometranscriptional regulator, IclR family4e-0652
NC_008268:3162824:3164996316499631666031608Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, IclR family4e-0652
NC_013922:799186:817920817920818738819Natrialba magadii ATCC 43099 chromosome, complete genometranscriptional regulator, IclR family5e-0651.6
NC_015410:3003417:301342030134203014208789Pseudomonas mendocina NK-01 chromosome, complete genomeIclR family transcriptional regulator5e-0651.6
NC_014039:2320307:233734123373412338105765Propionibacterium acnes SK137 chromosome, complete genometranscriptional regulator, IclR family, C-terminal domain protein5e-0651.6
NC_006085:2384892:240191124019112402675765Propionibacterium acnes KPA171202, complete genometranscriptional regulator (IclR family)5e-0651.6
NC_016511:2321999:234027323402732341037765Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeIclR family transcriptional regulator5e-0651.6
NC_016512:2322598:233961523396152340379765Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeIclR family transcriptional regulator5e-0651.6
NC_016516:2314115:233113123311312331895765Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeIclR family transcriptional regulator5e-0651.6
NC_015379:2505233:251805125180512518803753Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, IclR family5e-0651.6
NC_013967:1967896:197001819700181970779762Haloferax volcanii DS2 chromosome, complete genomeArcR family transcription regulator7e-0651.2
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein7e-0651.2
NC_011894:6708970:671845467184546719275822Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, IclR family9e-0650.8