Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8602543 Streptomyces coelicolor A3(2), complete genome

Start: 8602543, End: 8603184, Length: 642

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:8594500:860318186031818603747567Streptomyces coelicolor A3(2), complete genomesecreted protein3e-2098.2
NC_013929:2583849:2602612260261226037181107Streptomyces scabiei 87.22 chromosome, complete genomeglycosyl hydrolase2e-1582.4
NC_017186:8588000:8608475860847586098871413Amycolatopsis mediterranei S699 chromosome, complete genomealpha-N-arabinofuranosidase7e-1270.9
NC_014318:8590078:8608380860838086098311452Amycolatopsis mediterranei U32 chromosome, complete genomealpha-N-arabinofuranosidase8e-1270.5
NC_014623:7093203:7099539709953971016382100Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeoxidoreductase3e-1168.6
NC_014318:8590078:8605565860556586071451581Amycolatopsis mediterranei U32 chromosome, complete genomealpha-galactosidase8e-1167
NC_017186:8588000:8605621860562186072011581Amycolatopsis mediterranei S699 chromosome, complete genomealpha-galactosidase8e-1167
NC_014623:1829000:1839391183939118416282238Stigmatella aurantiaca DW4/3-1 chromosome, complete genomealpha-glucosidase-like protein1e-1066.6
NC_017186:8588000:8603333860333386054172085Amycolatopsis mediterranei S699 chromosome, complete genomeglucose/sorbosone dehydrogenase2e-1066.2
NC_014318:8590078:8603277860327786053612085Amycolatopsis mediterranei U32 chromosome, complete genomeglucose/sorbosone dehydrogenase2e-1066.2
NC_015953:3227000:3229461322946132307561296Streptomyces sp. SirexAA-E chromosome, complete genomeglycoside hydrolase family protein3e-1065.5
NC_013929:9450747:9461634946163494630641431Streptomyces scabiei 87.22 chromosome, complete genomearabinase6e-1064.3
NC_013929:66500:7330273302749421641Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0962
NC_013929:2583849:2600847260084726022741428Streptomyces scabiei 87.22 chromosome, complete genomearabinofuranosidase8e-0960.5
NC_017030:4146937:4149552414955241511951644Corallococcus coralloides DSM 2259 chromosome, complete genomeflavastacin2e-0858.9
NC_015125:2288487:2302291230229123054133123Microbacterium testaceum StLB037, complete genomehypothetical protein3e-0858.5
NC_016582:11820671:1182067111820671118222781608Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRicin B lectin4e-0858.2
NC_013093:5922777:5922777592277759251612385Actinosynnema mirum DSM 43827, complete genomePectinesterase1e-0756.6
NC_013131:7945280:7947087794708779498882802Catenulispora acidiphila DSM 44928, complete genomeglycoside hydrolase family 3 domain protein2e-0755.8
NC_013131:7945280:7978271797827179796801410Catenulispora acidiphila DSM 44928, complete genomeRicin B lectin4e-0754.7
NC_013745:104385:1055371055371070691533Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completeglycoside hydrolase family 431e-0653.1
NC_016109:1445369:1460201146020114636293429Kitasatospora setae KM-6054, complete genomehypothetical protein1e-0653.1
NC_016111:581143:6094546094546115682115Streptomyces cattleya NRRL 8057, complete genomehypothetical protein3e-0651.6
NC_016935:4117485:4153215415321541548821668Paenibacillus mucilaginosus 3016 chromosome, complete genomecellulase5e-0651.2