Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8598830 Streptomyces coelicolor A3(2), complete genome

Start: 8598830, End: 8599405, Length: 576

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017186:5586328:5599527559952756009391413Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-25116
NC_017186:8683964:8690906869090686945863681Amycolatopsis mediterranei S699 chromosome, complete genomeNB-ARC domain-containing protein5e-1477.4
NC_017186:5586328:5601422560142256038362415Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein9e-1476.6
NC_014318:5586287:5601209560120956037942586Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-1376.6
NC_014318:5586287:5599486559948656006461161Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein3e-1065.1
NC_014318:8687448:8690850869085086945303681Amycolatopsis mediterranei U32 chromosome, complete genomeNB-ARC domain-containing protein5e-1477.4
NC_018531:1900619:1912565191256519151142550Arthrobacter sp. Rue61a chromosome, complete genomenephrocystin3e-1891.3
NC_016025:807226:8105628105628139033342Candidatus Chloracidobacterium thermophilum B chromosome chromosomehypothetical protein4e-0961.2
NC_013131:7889127:7901223790122379056294407Catenulispora acidiphila DSM 44928, complete genomeTetratricopeptide TPR_44e-0961.2
NC_017030:8766757:8789107878910787923223216Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein1e-0550.1
NC_011726:1827000:1827925182792518302282304Cyanothece sp. PCC 8801, complete genomeTetratricopeptide TPR_2 repeat protein5e-1064.3
NC_013161:1801904:1803292180329218053102019Cyanothece sp. PCC 8802, complete genomeNB-ARC domain protein1e-0962.8
NC_019757:3492500:3506963350696335091942232Cylindrospermum stagnale PCC 7417, complete genomeTfp pilus assembly protein PilF2e-0652
NC_008278:3601959:3614846361484636180523207Frankia alni ACN14a, complete genomehypothetical protein; putative P-loop containing nucleotide triphosphate hydrolases and TIR domains2e-1168.9
NC_008278:514600:5337995337995363272529Frankia alni ACN14a, complete genomeputative ATP/GTP binding protein2e-1685.5
NC_007777:1018824:1018824101882410216282805Frankia sp. CcI3, complete genomeputative ATP/GTP binding protein1e-1169.3
NC_009921:5681677:5687555568755556895822028Frankia sp. EAN1pec, complete genomeputative ATP/GTP binding protein5e-27120
NC_014666:3629696:3637375363737536396542280Frankia sp. EuI1c chromosome, complete genomehypothetical protein1e-1376.3
NC_014666:1601972:1620253162025316265196267Frankia sp. EuI1c chromosome, complete genomehypothetical protein3e-0961.6
NC_014666:7838500:7846062784606278490703009Frankia sp. EuI1c chromosome, complete genomeNB-ARC domain protein3e-21101
NC_014666:1805806:1827973182797318308462874Frankia sp. EuI1c chromosome, complete genomesigma-70 region 2 domain protein4e-23107
NC_013757:1438812:1458928145892814615072580Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein2e-21102
NC_013757:900500:9101879101879131893003Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, SARP family1e-1479.7
NC_013757:729986:749063749063749767705Geodermatophilus obscurus DSM 43160, complete genometetratricopeptide TPR_47e-1373.6
NC_013757:1212308:1230217123021712331952979Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein3e-1375.1
NC_005125:2366778:2384287238428723873163030Gloeobacter violaceus PCC 7421, complete genomehypothetical protein4e-1064.3
NC_005125:4283345:4291713429171342932451533Gloeobacter violaceus PCC 7421, complete genomesimilar to kinesin light chain7e-1167
NC_013440:811780:8253318253318290173687Haliangium ochraceum DSM 14365, complete genomeHI0933 family protein2e-1065.5
NC_009973:178000:2139952139952173123318Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeTPR repeat-containing protein3e-1788.2
NC_009973:178000:2114062114062128151410Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeTPR repeat-containing protein3e-0961.6
NC_009974:53865:5386553865567262862Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completeTPR repeat-containing protein1e-0859.7
NC_009974:53865:7785377853804262574Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completeTPR repeat-containing protein3e-1065.1
NC_014391:6749156:6766968676696867694152448Micromonospora aurantiaca ATCC 27029 chromosome, complete genometetratricopeptide domain-containing protein9e-1166.6
NC_006363:36959:4500745007476552649Nocardia farcinica IFM 10152 plasmid pNF2, complete sequencehypothetical protein7e-1787
NC_003272:4621554:4636981463698146391132133Nostoc sp. PCC 7120, complete genomehypothetical protein1e-1479.3
NC_011060:1538375:1551720155172015555713852Pelodictyon phaeoclathratiforme BU-1, complete genomeTPR repeat-containing protein2e-1168.9
NC_014033:395000:4039554039554072753321Prevotella ruminicola 23 chromosome, complete genomehypothetical protein1e-1169.7
NC_014033:395000:4073204073204097792460Prevotella ruminicola 23 chromosome, complete genomehypothetical protein2e-0755.5
NC_014623:3029853:3047421304742130520314611Stigmatella aurantiaca DW4/3-1 chromosome, complete genometetratricopeptide repeat-containing protein2e-0755.5
NC_016582:10326938:103454851034548510346480996Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-0859.3
NC_016582:4983222:4983222498322249870823861Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein4e-0961.2
NC_016582:4983222:4994103499410349962472145Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein8e-0650.1
NC_003888:6103534:6128360612836061310202661Streptomyces coelicolor A3(2), complete genomeATP /GTP-binding protein6e-27120
NC_003888:5042283:5055828505582850587282901Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein2e-28125
NC_010572:33724:4832848328503041977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-1685.9
NC_010572:8493946:8495626849562684976021977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-1685.9
NC_013929:3660321:3669043366904336716582616Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein4e-1064.3
NC_013595:3541012:3559577355957735619822406Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-1270.9
NC_007759:2146254:2165995216599521671941200Syntrophus aciditrophicus SB, complete genometetratricopeptide repeat family protein6e-0753.9
NC_007333:430000:4499244499244544954572Thermobifida fusca YX, complete genomehypothetical protein1e-0859.7
NC_013510:1849751:1855024185502418591754152Thermomonospora curvata DSM 43183, complete genomehypothetical protein7e-1270.5
NC_013510:1849751:1862641186264118651722532Thermomonospora curvata DSM 43183, complete genomeNB-ARC domain protein2e-1065.5
NC_015577:676453:6911066911066952424137Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein7e-0857
NC_008312:5386630:5391012539101253949983987Trichodesmium erythraeum IMS101, complete genomepeptidase-like5e-1064.3
NC_008312:1725763:1731395173139517359184524Trichodesmium erythraeum IMS101, complete genomeTetratricopeptide TPR_23e-0651.6